Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Smarca1Q6PGB8 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Smarca1Q6PGB8 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC23.61■■□□□ 1.37
Smarca1Q6PGB8 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Smarca1Q6PGB8 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Smarca1Q6PGB8 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Smarca1Q6PGB8 Gm15820-201ENSMUST00000201566 728 ntBASIC23.61■■□□□ 1.37
Smarca1Q6PGB8 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Smarca1Q6PGB8 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Smarca1Q6PGB8 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC23.6■■□□□ 1.37
Smarca1Q6PGB8 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
Smarca1Q6PGB8 Gm18755-201ENSMUST00000218030 1099 ntBASIC23.6■■□□□ 1.37
Smarca1Q6PGB8 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Smarca1Q6PGB8 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Smarca1Q6PGB8 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Smarca1Q6PGB8 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC23.59■■□□□ 1.37
Smarca1Q6PGB8 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC23.59■■□□□ 1.37
Smarca1Q6PGB8 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
Smarca1Q6PGB8 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Smarca1Q6PGB8 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Smarca1Q6PGB8 Gm42418-201ENSMUST00000182010 1831 ntBASIC23.59■■□□□ 1.37
Smarca1Q6PGB8 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Smarca1Q6PGB8 Gm38160-201ENSMUST00000193090 2499 ntBASIC23.58■■□□□ 1.37
Smarca1Q6PGB8 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
Smarca1Q6PGB8 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Smarca1Q6PGB8 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Smarca1Q6PGB8 Gm42501-201ENSMUST00000200220 1026 ntBASIC23.58■■□□□ 1.37
Smarca1Q6PGB8 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
Smarca1Q6PGB8 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Smarca1Q6PGB8 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Smarca1Q6PGB8 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Smarca1Q6PGB8 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Smarca1Q6PGB8 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Smarca1Q6PGB8 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Smarca1Q6PGB8 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Smarca1Q6PGB8 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Smarca1Q6PGB8 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Smarca1Q6PGB8 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC23.56■■□□□ 1.36
Smarca1Q6PGB8 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Smarca1Q6PGB8 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Smarca1Q6PGB8 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Smarca1Q6PGB8 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
Smarca1Q6PGB8 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Smarca1Q6PGB8 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC23.55■■□□□ 1.36
Smarca1Q6PGB8 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Smarca1Q6PGB8 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
Smarca1Q6PGB8 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Smarca1Q6PGB8 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Smarca1Q6PGB8 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Smarca1Q6PGB8 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
Smarca1Q6PGB8 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Smarca1Q6PGB8 Gm10232-201ENSMUST00000089221 720 ntBASIC23.54■■□□□ 1.36
Smarca1Q6PGB8 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Smarca1Q6PGB8 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC23.54■■□□□ 1.36
Smarca1Q6PGB8 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Smarca1Q6PGB8 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Smarca1Q6PGB8 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Smarca1Q6PGB8 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC23.53■■□□□ 1.36
Smarca1Q6PGB8 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Smarca1Q6PGB8 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC23.52■■□□□ 1.36
Smarca1Q6PGB8 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Smarca1Q6PGB8 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Smarca1Q6PGB8 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC23.52■■□□□ 1.36
Smarca1Q6PGB8 AC093043.1-201ENSMUST00000226700 898 ntBASIC23.52■■□□□ 1.36
Smarca1Q6PGB8 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Smarca1Q6PGB8 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Smarca1Q6PGB8 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Smarca1Q6PGB8 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
Smarca1Q6PGB8 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Smarca1Q6PGB8 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Smarca1Q6PGB8 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
Smarca1Q6PGB8 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
Smarca1Q6PGB8 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC23.5■■□□□ 1.35
Smarca1Q6PGB8 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Smarca1Q6PGB8 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Smarca1Q6PGB8 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
Smarca1Q6PGB8 Gm16464-201ENSMUST00000117815 1095 ntBASIC23.5■■□□□ 1.35
Smarca1Q6PGB8 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
Smarca1Q6PGB8 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Smarca1Q6PGB8 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC23.5■■□□□ 1.35
Smarca1Q6PGB8 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
Smarca1Q6PGB8 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Smarca1Q6PGB8 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC23.49■■□□□ 1.35
Smarca1Q6PGB8 Nsd1-206ENSMUST00000224918 1001 ntBASIC23.49■■□□□ 1.35
Smarca1Q6PGB8 Gm12504-201ENSMUST00000120860 2231 ntBASIC23.49■■□□□ 1.35
Smarca1Q6PGB8 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Smarca1Q6PGB8 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
Smarca1Q6PGB8 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC23.48■■□□□ 1.35
Smarca1Q6PGB8 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC23.48■■□□□ 1.35
Smarca1Q6PGB8 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Smarca1Q6PGB8 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Smarca1Q6PGB8 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Smarca1Q6PGB8 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
Smarca1Q6PGB8 Rps24-207ENSMUST00000224568 714 ntBASIC23.47■■□□□ 1.35
Smarca1Q6PGB8 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Smarca1Q6PGB8 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Smarca1Q6PGB8 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
Smarca1Q6PGB8 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Smarca1Q6PGB8 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC23.46■■□□□ 1.35
Smarca1Q6PGB8 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms