Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim40Q3UWA4 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim40Q3UWA4 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim40Q3UWA4 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim40Q3UWA4 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim40Q3UWA4 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim40Q3UWA4 Mir3960-201ENSMUST00000198213 73 ntBASIC19.79■□□□□ 0.76
Trim40Q3UWA4 Gm7432-201ENSMUST00000210343 879 ntBASIC19.79■□□□□ 0.76
Trim40Q3UWA4 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC19.79■□□□□ 0.76
Trim40Q3UWA4 AC153911.1-201ENSMUST00000220378 758 ntBASIC19.79■□□□□ 0.76
Trim40Q3UWA4 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim40Q3UWA4 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim40Q3UWA4 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim40Q3UWA4 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim40Q3UWA4 Kdm3b-204ENSMUST00000224715 2032 ntBASIC19.78■□□□□ 0.76
Trim40Q3UWA4 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim40Q3UWA4 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim40Q3UWA4 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim40Q3UWA4 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Trim40Q3UWA4 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trim40Q3UWA4 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim40Q3UWA4 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Trim40Q3UWA4 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trim40Q3UWA4 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
Trim40Q3UWA4 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim40Q3UWA4 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
Trim40Q3UWA4 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Trim40Q3UWA4 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Trim40Q3UWA4 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC19.76■□□□□ 0.75
Trim40Q3UWA4 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Trim40Q3UWA4 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC19.76■□□□□ 0.75
Trim40Q3UWA4 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim40Q3UWA4 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim40Q3UWA4 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Trim40Q3UWA4 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim40Q3UWA4 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Trim40Q3UWA4 AC122317.2-201ENSMUST00000218708 1248 ntBASIC19.75■□□□□ 0.75
Trim40Q3UWA4 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim40Q3UWA4 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim40Q3UWA4 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Trim40Q3UWA4 Gm12818-201ENSMUST00000117562 1349 ntBASIC19.75■□□□□ 0.75
Trim40Q3UWA4 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim40Q3UWA4 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC19.74■□□□□ 0.75
Trim40Q3UWA4 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.74■□□□□ 0.75
Trim40Q3UWA4 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim40Q3UWA4 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim40Q3UWA4 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Trim40Q3UWA4 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim40Q3UWA4 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trim40Q3UWA4 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim40Q3UWA4 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim40Q3UWA4 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Trim40Q3UWA4 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim40Q3UWA4 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim40Q3UWA4 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Trim40Q3UWA4 AC154454.1-201ENSMUST00000225253 216 ntBASIC19.73■□□□□ 0.75
Trim40Q3UWA4 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim40Q3UWA4 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim40Q3UWA4 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim40Q3UWA4 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Trim40Q3UWA4 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim40Q3UWA4 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim40Q3UWA4 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim40Q3UWA4 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim40Q3UWA4 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Trim40Q3UWA4 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Trim40Q3UWA4 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim40Q3UWA4 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim40Q3UWA4 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim40Q3UWA4 Gm43403-201ENSMUST00000198011 1786 ntBASIC19.71■□□□□ 0.75
Trim40Q3UWA4 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.71■□□□□ 0.75
Trim40Q3UWA4 Gm34220-201ENSMUST00000223001 2709 ntBASIC19.71■□□□□ 0.75
Trim40Q3UWA4 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC19.71■□□□□ 0.75
Trim40Q3UWA4 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim40Q3UWA4 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.71■□□□□ 0.75
Trim40Q3UWA4 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.7■□□□□ 0.74
Trim40Q3UWA4 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim40Q3UWA4 Gm11599-201ENSMUST00000118720 878 ntBASIC19.7■□□□□ 0.74
Trim40Q3UWA4 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim40Q3UWA4 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim40Q3UWA4 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim40Q3UWA4 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim40Q3UWA4 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.69■□□□□ 0.74
Trim40Q3UWA4 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim40Q3UWA4 Terc-201ENSMUST00000082862 423 ntBASIC19.69■□□□□ 0.74
Trim40Q3UWA4 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim40Q3UWA4 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim40Q3UWA4 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Trim40Q3UWA4 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trim40Q3UWA4 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim40Q3UWA4 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim40Q3UWA4 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim40Q3UWA4 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim40Q3UWA4 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC19.67■□□□□ 0.74
Trim40Q3UWA4 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim40Q3UWA4 Iqck-206ENSMUST00000208658 2891 ntBASIC19.67■□□□□ 0.74
Trim40Q3UWA4 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim40Q3UWA4 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim40Q3UWA4 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Trim40Q3UWA4 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms