Protein–RNA interactions for Protein: Q2QI47

Ush2A, Usherin, mousemouse

Predictions only

Length 5,193 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ush2AQ2QI47 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ush2AQ2QI47 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ush2AQ2QI47 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ush2AQ2QI47 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ush2AQ2QI47 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ush2AQ2QI47 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ush2AQ2QI47 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC11.86□□□□□ -0.51
Ush2AQ2QI47 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Ush2AQ2QI47 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Ush2AQ2QI47 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ush2AQ2QI47 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ush2AQ2QI47 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ush2AQ2QI47 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Ush2AQ2QI47 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ush2AQ2QI47 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ush2AQ2QI47 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Ush2AQ2QI47 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ush2AQ2QI47 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Ush2AQ2QI47 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ush2AQ2QI47 AC164433.2-201ENSMUST00000226346 1701 ntBASIC11.85□□□□□ -0.51
Ush2AQ2QI47 AV356131-201ENSMUST00000206201 750 ntBASIC11.84□□□□□ -0.51
Ush2AQ2QI47 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC11.84□□□□□ -0.51
Ush2AQ2QI47 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ush2AQ2QI47 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Ush2AQ2QI47 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Ush2AQ2QI47 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ush2AQ2QI47 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC11.84□□□□□ -0.51
Ush2AQ2QI47 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC11.84□□□□□ -0.51
Ush2AQ2QI47 Gm18671-201ENSMUST00000214826 683 ntBASIC11.84□□□□□ -0.51
Ush2AQ2QI47 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ush2AQ2QI47 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Ush2AQ2QI47 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ush2AQ2QI47 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC11.84□□□□□ -0.51
Ush2AQ2QI47 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ush2AQ2QI47 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Ush2AQ2QI47 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Ush2AQ2QI47 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Ush2AQ2QI47 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC11.83□□□□□ -0.52
Ush2AQ2QI47 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Ush2AQ2QI47 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Ush2AQ2QI47 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC11.83□□□□□ -0.52
Ush2AQ2QI47 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Ush2AQ2QI47 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Ush2AQ2QI47 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Ush2AQ2QI47 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Ush2AQ2QI47 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Ush2AQ2QI47 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC11.83□□□□□ -0.52
Ush2AQ2QI47 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC11.83□□□□□ -0.52
Ush2AQ2QI47 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Ush2AQ2QI47 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Ush2AQ2QI47 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Ush2AQ2QI47 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Ush2AQ2QI47 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC11.82□□□□□ -0.52
Ush2AQ2QI47 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Ush2AQ2QI47 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Ush2AQ2QI47 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Ush2AQ2QI47 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ush2AQ2QI47 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ush2AQ2QI47 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Ush2AQ2QI47 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Ush2AQ2QI47 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC11.82□□□□□ -0.52
Ush2AQ2QI47 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Ush2AQ2QI47 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ush2AQ2QI47 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ush2AQ2QI47 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Ush2AQ2QI47 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ush2AQ2QI47 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC11.81□□□□□ -0.52
Ush2AQ2QI47 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ush2AQ2QI47 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ush2AQ2QI47 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
Ush2AQ2QI47 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC11.8□□□□□ -0.52
Ush2AQ2QI47 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ush2AQ2QI47 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ush2AQ2QI47 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC11.8□□□□□ -0.52
Ush2AQ2QI47 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ush2AQ2QI47 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Ush2AQ2QI47 Mir6982-201ENSMUST00000184354 68 ntBASIC11.8□□□□□ -0.52
Ush2AQ2QI47 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Ush2AQ2QI47 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Ush2AQ2QI47 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
Ush2AQ2QI47 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC11.79□□□□□ -0.52
Ush2AQ2QI47 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ush2AQ2QI47 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ush2AQ2QI47 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ush2AQ2QI47 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ush2AQ2QI47 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ush2AQ2QI47 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ush2AQ2QI47 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ush2AQ2QI47 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ush2AQ2QI47 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ush2AQ2QI47 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Ush2AQ2QI47 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ush2AQ2QI47 Gm29994-201ENSMUST00000195495 1193 ntBASIC11.78□□□□□ -0.52
Ush2AQ2QI47 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ush2AQ2QI47 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC11.78□□□□□ -0.52
Ush2AQ2QI47 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
Ush2AQ2QI47 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC11.77□□□□□ -0.52
Ush2AQ2QI47 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC11.77□□□□□ -0.52
Ush2AQ2QI47 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Ush2AQ2QI47 Gm11847-201ENSMUST00000125165 1119 ntBASIC11.77□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms