Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Ptchd3Q0EEE2 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Ptchd3Q0EEE2 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.34■□□□□ 0.85
Ptchd3Q0EEE2 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ptchd3Q0EEE2 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Ptchd3Q0EEE2 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ptchd3Q0EEE2 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.33■□□□□ 0.85
Ptchd3Q0EEE2 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ptchd3Q0EEE2 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ptchd3Q0EEE2 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ptchd3Q0EEE2 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
Ptchd3Q0EEE2 AC117245.4-201ENSMUST00000217388 1646 ntBASIC20.32■□□□□ 0.84
Ptchd3Q0EEE2 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Ptchd3Q0EEE2 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ptchd3Q0EEE2 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ptchd3Q0EEE2 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ptchd3Q0EEE2 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Ptchd3Q0EEE2 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.31■□□□□ 0.84
Ptchd3Q0EEE2 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ptchd3Q0EEE2 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ptchd3Q0EEE2 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ptchd3Q0EEE2 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ptchd3Q0EEE2 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Ptchd3Q0EEE2 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ptchd3Q0EEE2 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ptchd3Q0EEE2 Gm44428-201ENSMUST00000204474 874 ntBASIC20.3■□□□□ 0.84
Ptchd3Q0EEE2 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.3■□□□□ 0.84
Ptchd3Q0EEE2 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ptchd3Q0EEE2 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ptchd3Q0EEE2 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ptchd3Q0EEE2 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC20.29■□□□□ 0.84
Ptchd3Q0EEE2 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ptchd3Q0EEE2 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ptchd3Q0EEE2 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ptchd3Q0EEE2 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ptchd3Q0EEE2 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ptchd3Q0EEE2 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ptchd3Q0EEE2 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ptchd3Q0EEE2 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Ptchd3Q0EEE2 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ptchd3Q0EEE2 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC20.28■□□□□ 0.84
Ptchd3Q0EEE2 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ptchd3Q0EEE2 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.28■□□□□ 0.84
Ptchd3Q0EEE2 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC20.28■□□□□ 0.84
Ptchd3Q0EEE2 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ptchd3Q0EEE2 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ptchd3Q0EEE2 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Ptchd3Q0EEE2 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
Ptchd3Q0EEE2 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Ptchd3Q0EEE2 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ptchd3Q0EEE2 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.27■□□□□ 0.84
Ptchd3Q0EEE2 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ptchd3Q0EEE2 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ptchd3Q0EEE2 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC20.27■□□□□ 0.84
Ptchd3Q0EEE2 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ptchd3Q0EEE2 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ptchd3Q0EEE2 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.27■□□□□ 0.83
Ptchd3Q0EEE2 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Ptchd3Q0EEE2 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
Ptchd3Q0EEE2 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Ptchd3Q0EEE2 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ptchd3Q0EEE2 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
Ptchd3Q0EEE2 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ptchd3Q0EEE2 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ptchd3Q0EEE2 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ptchd3Q0EEE2 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ptchd3Q0EEE2 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.25■□□□□ 0.83
Ptchd3Q0EEE2 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Ptchd3Q0EEE2 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Ptchd3Q0EEE2 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Ptchd3Q0EEE2 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Ptchd3Q0EEE2 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Ptchd3Q0EEE2 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ptchd3Q0EEE2 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ptchd3Q0EEE2 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Ptchd3Q0EEE2 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ptchd3Q0EEE2 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ptchd3Q0EEE2 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ptchd3Q0EEE2 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ptchd3Q0EEE2 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ptchd3Q0EEE2 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ptchd3Q0EEE2 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ptchd3Q0EEE2 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ptchd3Q0EEE2 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ptchd3Q0EEE2 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ptchd3Q0EEE2 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ptchd3Q0EEE2 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ptchd3Q0EEE2 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Ptchd3Q0EEE2 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.22■□□□□ 0.83
Ptchd3Q0EEE2 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Ptchd3Q0EEE2 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ptchd3Q0EEE2 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ptchd3Q0EEE2 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ptchd3Q0EEE2 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ptchd3Q0EEE2 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ptchd3Q0EEE2 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ptchd3Q0EEE2 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ptchd3Q0EEE2 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ptchd3Q0EEE2 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Ptchd3Q0EEE2 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 12.1 ms