Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Hmgb3O54879 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Hmgb3O54879 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Hmgb3O54879 AC153524.1-201ENSMUST00000220436 1935 ntBASIC17.51■□□□□ 0.39
Hmgb3O54879 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Hmgb3O54879 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Hmgb3O54879 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Hmgb3O54879 Gm9910-201ENSMUST00000195385 1550 ntBASIC17.51■□□□□ 0.39
Hmgb3O54879 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Hmgb3O54879 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Hmgb3O54879 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC17.5■□□□□ 0.39
Hmgb3O54879 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb3O54879 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC17.5■□□□□ 0.39
Hmgb3O54879 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb3O54879 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb3O54879 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Hmgb3O54879 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb3O54879 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb3O54879 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb3O54879 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb3O54879 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb3O54879 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb3O54879 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb3O54879 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC17.49■□□□□ 0.39
Hmgb3O54879 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC17.49■□□□□ 0.39
Hmgb3O54879 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Hmgb3O54879 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
Hmgb3O54879 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Hmgb3O54879 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb3O54879 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb3O54879 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb3O54879 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb3O54879 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb3O54879 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb3O54879 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb3O54879 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb3O54879 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb3O54879 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Hmgb3O54879 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Hmgb3O54879 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb3O54879 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Hmgb3O54879 Gm37415-201ENSMUST00000192265 2054 ntBASIC17.46■□□□□ 0.39
Hmgb3O54879 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
Hmgb3O54879 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC17.46■□□□□ 0.38
Hmgb3O54879 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Hmgb3O54879 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb3O54879 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb3O54879 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb3O54879 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Hmgb3O54879 Gm42809-201ENSMUST00000198429 1138 ntBASIC17.45■□□□□ 0.38
Hmgb3O54879 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC17.45■□□□□ 0.38
Hmgb3O54879 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb3O54879 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb3O54879 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Hmgb3O54879 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC17.44■□□□□ 0.38
Hmgb3O54879 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb3O54879 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Hmgb3O54879 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Hmgb3O54879 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb3O54879 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
Hmgb3O54879 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb3O54879 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb3O54879 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb3O54879 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb3O54879 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb3O54879 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb3O54879 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb3O54879 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb3O54879 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb3O54879 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.43■□□□□ 0.38
Hmgb3O54879 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb3O54879 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb3O54879 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Hmgb3O54879 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb3O54879 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb3O54879 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb3O54879 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb3O54879 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb3O54879 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb3O54879 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb3O54879 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Hmgb3O54879 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb3O54879 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb3O54879 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb3O54879 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Hmgb3O54879 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC17.42■□□□□ 0.38
Hmgb3O54879 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb3O54879 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Hmgb3O54879 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb3O54879 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb3O54879 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC17.41■□□□□ 0.38
Hmgb3O54879 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC17.41■□□□□ 0.38
Hmgb3O54879 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC17.41■□□□□ 0.38
Hmgb3O54879 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC17.41■□□□□ 0.38
Hmgb3O54879 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb3O54879 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb3O54879 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb3O54879 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC17.41■□□□□ 0.38
Hmgb3O54879 Hsf1-207ENSMUST00000228371 2102 ntBASIC17.41■□□□□ 0.38
Hmgb3O54879 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms