Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 AC153962.1-201ENSMUST00000218530 1948 ntBASIC20.94■□□□□ 0.94
Chd3B1AR17 Etf1-202ENSMUST00000180351 108 ntBASIC20.94■□□□□ 0.94
Chd3B1AR17 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Chd3B1AR17 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Chd3B1AR17 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Chd3B1AR17 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Chd3B1AR17 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC20.93■□□□□ 0.94
Chd3B1AR17 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Chd3B1AR17 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC20.93■□□□□ 0.94
Chd3B1AR17 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Chd3B1AR17 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC20.93■□□□□ 0.94
Chd3B1AR17 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Chd3B1AR17 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Chd3B1AR17 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Chd3B1AR17 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Chd3B1AR17 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Chd3B1AR17 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Chd3B1AR17 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Chd3B1AR17 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Chd3B1AR17 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Chd3B1AR17 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Chd3B1AR17 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Chd3B1AR17 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.91■□□□□ 0.94
Chd3B1AR17 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Chd3B1AR17 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Chd3B1AR17 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC20.91■□□□□ 0.94
Chd3B1AR17 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Chd3B1AR17 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC20.9■□□□□ 0.94
Chd3B1AR17 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Chd3B1AR17 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Chd3B1AR17 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
Chd3B1AR17 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Chd3B1AR17 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Chd3B1AR17 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Chd3B1AR17 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.89■□□□□ 0.93
Chd3B1AR17 Gm12922-201ENSMUST00000120626 809 ntBASIC20.89■□□□□ 0.93
Chd3B1AR17 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Chd3B1AR17 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.89■□□□□ 0.93
Chd3B1AR17 Gm22238-201ENSMUST00000175222 88 ntBASIC20.89■□□□□ 0.93
Chd3B1AR17 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.89■□□□□ 0.93
Chd3B1AR17 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.89■□□□□ 0.93
Chd3B1AR17 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Chd3B1AR17 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Chd3B1AR17 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC20.89■□□□□ 0.93
Chd3B1AR17 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC20.89■□□□□ 0.93
Chd3B1AR17 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Chd3B1AR17 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Chd3B1AR17 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Chd3B1AR17 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Chd3B1AR17 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
Chd3B1AR17 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.87■□□□□ 0.93
Chd3B1AR17 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Chd3B1AR17 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.87■□□□□ 0.93
Chd3B1AR17 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Chd3B1AR17 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Chd3B1AR17 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Chd3B1AR17 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Chd3B1AR17 Gm10620-201ENSMUST00000098379 1332 ntBASIC20.86■□□□□ 0.93
Chd3B1AR17 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Chd3B1AR17 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Chd3B1AR17 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Chd3B1AR17 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Chd3B1AR17 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Chd3B1AR17 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Chd3B1AR17 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Chd3B1AR17 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Chd3B1AR17 Gm21956-201ENSMUST00000179946 522 ntBASIC20.85■□□□□ 0.93
Chd3B1AR17 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Chd3B1AR17 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Chd3B1AR17 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Chd3B1AR17 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chd3B1AR17 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chd3B1AR17 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chd3B1AR17 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chd3B1AR17 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC20.84■□□□□ 0.93
Chd3B1AR17 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chd3B1AR17 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chd3B1AR17 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chd3B1AR17 Gm40881-201ENSMUST00000223397 166 ntBASIC20.84■□□□□ 0.93
Chd3B1AR17 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chd3B1AR17 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chd3B1AR17 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Chd3B1AR17 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Chd3B1AR17 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC20.82■□□□□ 0.92
Chd3B1AR17 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC20.82■□□□□ 0.92
Chd3B1AR17 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Chd3B1AR17 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Chd3B1AR17 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC20.82■□□□□ 0.92
Chd3B1AR17 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Chd3B1AR17 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
Chd3B1AR17 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Chd3B1AR17 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC20.81■□□□□ 0.92
Chd3B1AR17 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Chd3B1AR17 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Chd3B1AR17 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Chd3B1AR17 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Chd3B1AR17 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Chd3B1AR17 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC20.8■□□□□ 0.92
Chd3B1AR17 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Chd3B1AR17 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC20.8■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms