Protein–RNA interactions for Protein: Q9Y3A5

SBDS, Ribosome maturation protein SBDS, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SBDSQ9Y3A5 SLC26A5-212ENST00000445809 2324 ntTSL 29.34□□□□□ -0.911e-6■■■■□ 21.8
SBDSQ9Y3A5 SLC26A5-213ENST00000454864 2242 ntTSL 28.6□□□□□ -1.031e-6■■■■□ 21.8
SBDSQ9Y3A5 SLC26A5-206ENST00000393727 2270 ntAPPRIS ALT1 TSL 1 (best) BASIC7.85□□□□□ -1.151e-6■■■■□ 21.8
SBDSQ9Y3A5 SLC26A5-210ENST00000423416 2374 ntTSL 27.84□□□□□ -1.151e-6■■■■□ 21.8
SBDSQ9Y3A5 SLC26A5-214ENST00000456463 2370 ntTSL 56.92□□□□□ -1.31e-6■■■■□ 21.8
SBDSQ9Y3A5 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC6.86□□□□□ -1.311e-6■■■■□ 21.8
SBDSQ9Y3A5 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.36□□□□□ -1.551e-6■■■■□ 21.8
SBDSQ9Y3A5 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC4.7□□□□□ -1.661e-6■■■■□ 21.8
SBDSQ9Y3A5 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.065e-6■■■■□ 19.9
SBDSQ9Y3A5 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.245e-6■■■■□ 19.9
SBDSQ9Y3A5 SORCS2-204ENST00000511199 532 ntTSL 49.32□□□□□ -0.925e-6■■■■□ 19.9
SBDSQ9Y3A5 RNA5SP226-201ENST00000362653 115 ntBASIC7.96□□□□□ -1.142e-16■■■□□ 16.9
SBDSQ9Y3A5 FLVCR2-201ENST00000238667 3632 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.391e-6■■□□□ 14.2
SBDSQ9Y3A5 FLVCR2-205ENST00000554496 441 ntTSL 312.4□□□□□ -0.421e-6■■□□□ 14.2
SBDSQ9Y3A5 FLVCR2-209ENST00000555385 218 ntTSL 49.59□□□□□ -0.871e-6■■□□□ 14.2
SBDSQ9Y3A5 RNA5SP387-201ENST00000364226 106 ntBASIC2.47□□□□□ -2.011e-6■■□□□ 14.2
SBDSQ9Y3A5 TIMP1-201ENST00000218388 892 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.229e-7■■□□□ 12.9
SBDSQ9Y3A5 TIMP1-202ENST00000377017 626 ntTSL 2 BASIC13.65□□□□□ -0.229e-7■■□□□ 12.9
SBDSQ9Y3A5 TIMP1-204ENST00000445623 595 ntTSL 213.65□□□□□ -0.229e-7■■□□□ 12.9
SBDSQ9Y3A5 RNA5SP481-201ENST00000516814 122 ntBASIC0.91□□□□□ -2.261e-20■■□□□ 12.3
SBDSQ9Y3A5 ATP5E-202ENST00000395659 1878 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.561e-8■■□□□ 11.9
SBDSQ9Y3A5 ATP5E-201ENST00000243997 3665 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.931e-8■■□□□ 11.9
SBDSQ9Y3A5 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.31e-8■■□□□ 11.9
SBDSQ9Y3A5 RNU6-9-201ENST00000384776 107 ntBASIC0.87□□□□□ -2.276e-12■■□□□ 11.9
SBDSQ9Y3A5 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.832e-9■□□□□ 11.1
SBDSQ9Y3A5 SHF-211ENST00000561278 578 ntTSL 412.37□□□□□ -0.432e-9■□□□□ 11.1
SBDSQ9Y3A5 AC051619.8-201ENST00000563103 308 ntBASIC10.74□□□□□ -0.692e-9■□□□□ 11.1
SBDSQ9Y3A5 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.372e-6■□□□□ 10.7
SBDSQ9Y3A5 PDE3A-202ENST00000542675 685 ntTSL 311.21□□□□□ -0.612e-6■□□□□ 10.7
SBDSQ9Y3A5 HNRNPD-205ENST00000507010 748 ntTSL 324.58■■□□□ 1.533e-14■□□□□ 10.3
SBDSQ9Y3A5 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.493e-14■□□□□ 10.3
SBDSQ9Y3A5 HNRNPD-209ENST00000513584 1240 ntTSL 224.03■■□□□ 1.443e-14■□□□□ 10.3
SBDSQ9Y3A5 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.353e-14■□□□□ 10.3
SBDSQ9Y3A5 HNRNPD-204ENST00000503822 607 ntTSL 521.78■■□□□ 1.083e-14■□□□□ 10.3
SBDSQ9Y3A5 HNRNPD-207ENST00000509107 583 ntTSL 521.27■■□□□ 13e-14■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.67■□□□□ 0.93e-6■□□□□ 10.3
SBDSQ9Y3A5 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.623e-14■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.513e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC14.29□□□□□ -0.123e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-222ENST00000534319 1884 ntTSL 2 BASIC13.23□□□□□ -0.293e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-201ENST00000227378 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.363e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-207ENST00000526110 1924 ntTSL 5 BASIC12.5□□□□□ -0.413e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-211ENST00000527983 1509 ntTSL 1 (best)12.09□□□□□ -0.473e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-215ENST00000532091 2301 ntTSL 511.6□□□□□ -0.553e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-218ENST00000532636 2306 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.583e-6■□□□□ 10.3
SBDSQ9Y3A5 HNRNPD-212ENST00000515432 545 ntTSL 56.64□□□□□ -1.353e-14■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-220ENST00000533238 465 ntTSL 36.53□□□□□ -1.363e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-212ENST00000528292 1112 ntTSL 26.13□□□□□ -1.433e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-209ENST00000526862 504 ntTSL 34.4□□□□□ -1.713e-6■□□□□ 10.3
SBDSQ9Y3A5 SDF2L1-202ENST00000466935 601 ntTSL 224.88■■□□□ 1.574e-7■□□□□ 9.1
SBDSQ9Y3A5 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.534e-7■□□□□ 9.1
SBDSQ9Y3A5 C12orf57-203ENST00000538392 979 ntTSL 218.76■□□□□ 0.594e-7■□□□□ 9.1
SBDSQ9Y3A5 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.06□□□□□ -0.164e-7■□□□□ 9.1
SBDSQ9Y3A5 C12orf57-202ENST00000537087 662 ntTSL 2 BASIC11.21□□□□□ -0.614e-7■□□□□ 9.1
SBDSQ9Y3A5 C12orf57-207ENST00000545581 556 ntTSL 39.27□□□□□ -0.934e-7■□□□□ 9.1
SBDSQ9Y3A5 C12orf57-205ENST00000542222 640 ntTSL 29.13□□□□□ -0.954e-7■□□□□ 9.1
SBDSQ9Y3A5 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC12.37□□□□□ -0.433e-28■□□□□ 9.1
SBDSQ9Y3A5 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.937e-6■□□□□ 8.6
SBDSQ9Y3A5 SET-204ENST00000372692 2850 ntTSL 1 (best) BASIC11.05□□□□□ -0.647e-6■□□□□ 8.6
SBDSQ9Y3A5 SET-205ENST00000409104 962 ntTSL 5 BASIC9.41□□□□□ -0.97e-6■□□□□ 8.6
SBDSQ9Y3A5 SET-202ENST00000372686 1029 ntTSL 22.89□□□□□ -1.957e-6■□□□□ 8.6
SBDSQ9Y3A5 SET-203ENST00000372688 801 ntTSL 2 BASIC2.25□□□□□ -2.057e-6■□□□□ 8.6
SBDSQ9Y3A5 HIST1H4E-201ENST00000615164 1487 ntAPPRIS P1 BASIC7.94□□□□□ -1.141e-9■□□□□ 8.4
Retrieved 63 of 163 protein–RNA pairs in 13.9 ms