Protein–RNA interactions for Protein: Q9Y3A5

SBDS, Ribosome maturation protein SBDS, humanhuman

Known RBP eCLIP

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SBDSQ9Y3A5 SLC26A5-212ENST00000445809 2324 ntTSL 29.34□□□□□ -0.911e-6■■■■□ 21.8
SBDSQ9Y3A5 SLC26A5-213ENST00000454864 2242 ntTSL 28.6□□□□□ -1.031e-6■■■■□ 21.8
SBDSQ9Y3A5 SLC26A5-206ENST00000393727 2270 ntAPPRIS ALT1 TSL 1 (best) BASIC7.85□□□□□ -1.151e-6■■■■□ 21.8
SBDSQ9Y3A5 SLC26A5-210ENST00000423416 2374 ntTSL 27.84□□□□□ -1.151e-6■■■■□ 21.8
SBDSQ9Y3A5 SLC26A5-214ENST00000456463 2370 ntTSL 56.92□□□□□ -1.31e-6■■■■□ 21.8
SBDSQ9Y3A5 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC6.86□□□□□ -1.311e-6■■■■□ 21.8
SBDSQ9Y3A5 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.36□□□□□ -1.551e-6■■■■□ 21.8
SBDSQ9Y3A5 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC4.7□□□□□ -1.661e-6■■■■□ 21.8
SBDSQ9Y3A5 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.065e-6■■■■□ 19.9
SBDSQ9Y3A5 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.245e-6■■■■□ 19.9
SBDSQ9Y3A5 SORCS2-204ENST00000511199 532 ntTSL 49.32□□□□□ -0.925e-6■■■■□ 19.9
SBDSQ9Y3A5 RNA5SP226-201ENST00000362653 115 ntBASIC7.96□□□□□ -1.142e-16■■■□□ 16.9
SBDSQ9Y3A5 FLVCR2-201ENST00000238667 3632 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.391e-6■■□□□ 14.2
SBDSQ9Y3A5 FLVCR2-205ENST00000554496 441 ntTSL 312.4□□□□□ -0.421e-6■■□□□ 14.2
SBDSQ9Y3A5 FLVCR2-209ENST00000555385 218 ntTSL 49.59□□□□□ -0.871e-6■■□□□ 14.2
SBDSQ9Y3A5 RNA5SP387-201ENST00000364226 106 ntBASIC2.47□□□□□ -2.011e-6■■□□□ 14.2
SBDSQ9Y3A5 TIMP1-201ENST00000218388 892 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.229e-7■■□□□ 12.9
SBDSQ9Y3A5 TIMP1-202ENST00000377017 626 ntTSL 2 BASIC13.65□□□□□ -0.229e-7■■□□□ 12.9
SBDSQ9Y3A5 TIMP1-204ENST00000445623 595 ntTSL 213.65□□□□□ -0.229e-7■■□□□ 12.9
SBDSQ9Y3A5 RNA5SP481-201ENST00000516814 122 ntBASIC0.91□□□□□ -2.261e-20■■□□□ 12.3
SBDSQ9Y3A5 ATP5E-202ENST00000395659 1878 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.561e-8■■□□□ 11.9
SBDSQ9Y3A5 ATP5E-201ENST00000243997 3665 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.931e-8■■□□□ 11.9
SBDSQ9Y3A5 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.31e-8■■□□□ 11.9
SBDSQ9Y3A5 RNU6-9-201ENST00000384776 107 ntBASIC0.87□□□□□ -2.276e-12■■□□□ 11.9
SBDSQ9Y3A5 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.832e-9■□□□□ 11.1
SBDSQ9Y3A5 SHF-211ENST00000561278 578 ntTSL 412.37□□□□□ -0.432e-9■□□□□ 11.1
SBDSQ9Y3A5 AC051619.8-201ENST00000563103 308 ntBASIC10.74□□□□□ -0.692e-9■□□□□ 11.1
SBDSQ9Y3A5 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.372e-6■□□□□ 10.7
SBDSQ9Y3A5 PDE3A-202ENST00000542675 685 ntTSL 311.21□□□□□ -0.612e-6■□□□□ 10.7
SBDSQ9Y3A5 HNRNPD-205ENST00000507010 748 ntTSL 324.58■■□□□ 1.533e-14■□□□□ 10.3
SBDSQ9Y3A5 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.493e-14■□□□□ 10.3
SBDSQ9Y3A5 HNRNPD-209ENST00000513584 1240 ntTSL 224.03■■□□□ 1.443e-14■□□□□ 10.3
SBDSQ9Y3A5 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.353e-14■□□□□ 10.3
SBDSQ9Y3A5 HNRNPD-204ENST00000503822 607 ntTSL 521.78■■□□□ 1.083e-14■□□□□ 10.3
SBDSQ9Y3A5 HNRNPD-207ENST00000509107 583 ntTSL 521.27■■□□□ 13e-14■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.67■□□□□ 0.93e-6■□□□□ 10.3
SBDSQ9Y3A5 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.623e-14■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.513e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC14.29□□□□□ -0.123e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-222ENST00000534319 1884 ntTSL 2 BASIC13.23□□□□□ -0.293e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-201ENST00000227378 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.363e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-207ENST00000526110 1924 ntTSL 5 BASIC12.5□□□□□ -0.413e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-211ENST00000527983 1509 ntTSL 1 (best)12.09□□□□□ -0.473e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-215ENST00000532091 2301 ntTSL 511.6□□□□□ -0.553e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-218ENST00000532636 2306 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.583e-6■□□□□ 10.3
SBDSQ9Y3A5 HNRNPD-212ENST00000515432 545 ntTSL 56.64□□□□□ -1.353e-14■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-220ENST00000533238 465 ntTSL 36.53□□□□□ -1.363e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-212ENST00000528292 1112 ntTSL 26.13□□□□□ -1.433e-6■□□□□ 10.3
SBDSQ9Y3A5 HSPA8-209ENST00000526862 504 ntTSL 34.4□□□□□ -1.713e-6■□□□□ 10.3
SBDSQ9Y3A5 SDF2L1-202ENST00000466935 601 ntTSL 224.88■■□□□ 1.574e-7■□□□□ 9.1
SBDSQ9Y3A5 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.534e-7■□□□□ 9.1
SBDSQ9Y3A5 C12orf57-203ENST00000538392 979 ntTSL 218.76■□□□□ 0.594e-7■□□□□ 9.1
SBDSQ9Y3A5 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.06□□□□□ -0.164e-7■□□□□ 9.1
SBDSQ9Y3A5 C12orf57-202ENST00000537087 662 ntTSL 2 BASIC11.21□□□□□ -0.614e-7■□□□□ 9.1
SBDSQ9Y3A5 C12orf57-207ENST00000545581 556 ntTSL 39.27□□□□□ -0.934e-7■□□□□ 9.1
SBDSQ9Y3A5 C12orf57-205ENST00000542222 640 ntTSL 29.13□□□□□ -0.954e-7■□□□□ 9.1
SBDSQ9Y3A5 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC12.37□□□□□ -0.433e-28■□□□□ 9.1
SBDSQ9Y3A5 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.937e-6■□□□□ 8.6
SBDSQ9Y3A5 SET-204ENST00000372692 2850 ntTSL 1 (best) BASIC11.05□□□□□ -0.647e-6■□□□□ 8.6
SBDSQ9Y3A5 SET-205ENST00000409104 962 ntTSL 5 BASIC9.41□□□□□ -0.97e-6■□□□□ 8.6
SBDSQ9Y3A5 SET-202ENST00000372686 1029 ntTSL 22.89□□□□□ -1.957e-6■□□□□ 8.6
SBDSQ9Y3A5 SET-203ENST00000372688 801 ntTSL 2 BASIC2.25□□□□□ -2.057e-6■□□□□ 8.6
SBDSQ9Y3A5 HIST1H4E-201ENST00000615164 1487 ntAPPRIS P1 BASIC7.94□□□□□ -1.141e-9■□□□□ 8.4
Retrieved 63 of 163 protein–RNA pairs in 15.1 ms