Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Cdc40Q9DC48 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Cdc40Q9DC48 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Cdc40Q9DC48 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Cdc40Q9DC48 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Cdc40Q9DC48 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC25.43■■□□□ 1.66
Cdc40Q9DC48 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
Cdc40Q9DC48 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Cdc40Q9DC48 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC25.38■■□□□ 1.65
Cdc40Q9DC48 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
Cdc40Q9DC48 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
Cdc40Q9DC48 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
Cdc40Q9DC48 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC25.31■■□□□ 1.64
Cdc40Q9DC48 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
Cdc40Q9DC48 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Cdc40Q9DC48 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Cdc40Q9DC48 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Cdc40Q9DC48 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC25.29■■□□□ 1.64
Cdc40Q9DC48 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Cdc40Q9DC48 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Cdc40Q9DC48 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC25.2■■□□□ 1.63
Cdc40Q9DC48 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC25.19■■□□□ 1.62
Cdc40Q9DC48 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC25.19■■□□□ 1.62
Cdc40Q9DC48 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Cdc40Q9DC48 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Cdc40Q9DC48 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.61
Cdc40Q9DC48 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC25.13■■□□□ 1.61
Cdc40Q9DC48 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Cdc40Q9DC48 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Cdc40Q9DC48 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Cdc40Q9DC48 Gm17082-201ENSMUST00000166043 1091 ntBASIC25.05■■□□□ 1.6
Cdc40Q9DC48 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Cdc40Q9DC48 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Cdc40Q9DC48 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
Cdc40Q9DC48 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Cdc40Q9DC48 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
Cdc40Q9DC48 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC24.97■■□□□ 1.59
Cdc40Q9DC48 Gm27322-201ENSMUST00000184007 104 ntBASIC24.94■■□□□ 1.58
Cdc40Q9DC48 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Cdc40Q9DC48 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Cdc40Q9DC48 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
Cdc40Q9DC48 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.58
Cdc40Q9DC48 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Cdc40Q9DC48 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Cdc40Q9DC48 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Cdc40Q9DC48 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
Cdc40Q9DC48 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Cdc40Q9DC48 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Cdc40Q9DC48 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Cdc40Q9DC48 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Cdc40Q9DC48 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.7■■□□□ 1.55
Cdc40Q9DC48 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Cdc40Q9DC48 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC24.69■■□□□ 1.54
Cdc40Q9DC48 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC24.68■■□□□ 1.54
Cdc40Q9DC48 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Cdc40Q9DC48 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC24.63■■□□□ 1.53
Cdc40Q9DC48 Gm24804-201ENSMUST00000174982 85 ntBASIC24.63■■□□□ 1.53
Cdc40Q9DC48 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC24.62■■□□□ 1.53
Cdc40Q9DC48 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Cdc40Q9DC48 Zfp131-207ENSMUST00000224946 1783 ntBASIC24.6■■□□□ 1.53
Cdc40Q9DC48 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC24.59■■□□□ 1.53
Cdc40Q9DC48 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Cdc40Q9DC48 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
Cdc40Q9DC48 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Cdc40Q9DC48 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
Cdc40Q9DC48 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Cdc40Q9DC48 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Cdc40Q9DC48 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Cdc40Q9DC48 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
Cdc40Q9DC48 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Cdc40Q9DC48 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
Cdc40Q9DC48 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Cdc40Q9DC48 AL845457.1-201ENSMUST00000197244 68 ntBASIC24.43■■□□□ 1.5
Cdc40Q9DC48 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC24.41■■□□□ 1.5
Cdc40Q9DC48 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Cdc40Q9DC48 AC166822.3-201ENSMUST00000227394 661 ntBASIC24.38■■□□□ 1.49
Cdc40Q9DC48 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Cdc40Q9DC48 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Cdc40Q9DC48 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Cdc40Q9DC48 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Cdc40Q9DC48 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
Cdc40Q9DC48 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Cdc40Q9DC48 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Cdc40Q9DC48 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Cdc40Q9DC48 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Cdc40Q9DC48 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC24.3■■□□□ 1.48
Cdc40Q9DC48 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Cdc40Q9DC48 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
Cdc40Q9DC48 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Cdc40Q9DC48 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Cdc40Q9DC48 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Cdc40Q9DC48 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Cdc40Q9DC48 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
Cdc40Q9DC48 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Cdc40Q9DC48 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Cdc40Q9DC48 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Cdc40Q9DC48 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Cdc40Q9DC48 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Cdc40Q9DC48 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC24.18■■□□□ 1.46
Cdc40Q9DC48 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms