Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Limch1Q3UH68 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
Limch1Q3UH68 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC32.61■■■□□ 2.81
Limch1Q3UH68 Gm26115-201ENSMUST00000175605 87 ntBASIC32.58■■■□□ 2.81
Limch1Q3UH68 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
Limch1Q3UH68 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
Limch1Q3UH68 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
Limch1Q3UH68 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
Limch1Q3UH68 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC32.45■■■□□ 2.79
Limch1Q3UH68 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
Limch1Q3UH68 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
Limch1Q3UH68 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC32.42■■■□□ 2.78
Limch1Q3UH68 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC32.4■■■□□ 2.78
Limch1Q3UH68 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC32.4■■■□□ 2.78
Limch1Q3UH68 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
Limch1Q3UH68 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
Limch1Q3UH68 Gm8109-201ENSMUST00000194076 746 ntBASIC32.35■■■□□ 2.77
Limch1Q3UH68 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
Limch1Q3UH68 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32.32■■■□□ 2.76
Limch1Q3UH68 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
Limch1Q3UH68 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC32.31■■■□□ 2.76
Limch1Q3UH68 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
Limch1Q3UH68 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Limch1Q3UH68 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Limch1Q3UH68 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
Limch1Q3UH68 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC32.19■■■□□ 2.74
Limch1Q3UH68 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
Limch1Q3UH68 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC32.11■■■□□ 2.73
Limch1Q3UH68 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC32.07■■■□□ 2.72
Limch1Q3UH68 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
Limch1Q3UH68 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31.99■■■□□ 2.71
Limch1Q3UH68 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Limch1Q3UH68 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.71
Limch1Q3UH68 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.7
Limch1Q3UH68 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
Limch1Q3UH68 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Limch1Q3UH68 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC31.82■■■□□ 2.69
Limch1Q3UH68 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC31.81■■■□□ 2.68
Limch1Q3UH68 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Limch1Q3UH68 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Limch1Q3UH68 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
Limch1Q3UH68 Gm17082-201ENSMUST00000166043 1091 ntBASIC31.72■■■□□ 2.67
Limch1Q3UH68 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Limch1Q3UH68 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31.7■■■□□ 2.67
Limch1Q3UH68 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC31.69■■■□□ 2.66
Limch1Q3UH68 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC31.68■■■□□ 2.66
Limch1Q3UH68 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Limch1Q3UH68 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC31.66■■■□□ 2.66
Limch1Q3UH68 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31.63■■■□□ 2.65
Limch1Q3UH68 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31.62■■■□□ 2.65
Limch1Q3UH68 Zfp131-207ENSMUST00000224946 1783 ntBASIC31.61■■■□□ 2.65
Limch1Q3UH68 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Limch1Q3UH68 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Limch1Q3UH68 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
Limch1Q3UH68 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC31.59■■■□□ 2.65
Limch1Q3UH68 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC31.56■■■□□ 2.64
Limch1Q3UH68 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Limch1Q3UH68 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Limch1Q3UH68 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Limch1Q3UH68 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Limch1Q3UH68 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC31.47■■■□□ 2.63
Limch1Q3UH68 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
Limch1Q3UH68 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31.46■■■□□ 2.63
Limch1Q3UH68 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Limch1Q3UH68 Gm27322-201ENSMUST00000184007 104 ntBASIC31.43■■■□□ 2.62
Limch1Q3UH68 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC31.4■■■□□ 2.62
Limch1Q3UH68 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
Limch1Q3UH68 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Limch1Q3UH68 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31.33■■■□□ 2.61
Limch1Q3UH68 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Limch1Q3UH68 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Limch1Q3UH68 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
Limch1Q3UH68 Gm24804-201ENSMUST00000174982 85 ntBASIC31.31■■■□□ 2.6
Limch1Q3UH68 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Limch1Q3UH68 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
Limch1Q3UH68 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Limch1Q3UH68 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Limch1Q3UH68 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC31.13■■■□□ 2.57
Limch1Q3UH68 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Limch1Q3UH68 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Limch1Q3UH68 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
Limch1Q3UH68 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Limch1Q3UH68 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC31.07■■■□□ 2.56
Limch1Q3UH68 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Limch1Q3UH68 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Limch1Q3UH68 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
Limch1Q3UH68 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC31.01■■■□□ 2.55
Limch1Q3UH68 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC30.96■■■□□ 2.55
Limch1Q3UH68 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Limch1Q3UH68 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC30.95■■■□□ 2.55
Limch1Q3UH68 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Limch1Q3UH68 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC30.93■■■□□ 2.54
Limch1Q3UH68 Gm2415-204ENSMUST00000190235 2004 ntBASIC30.93■■■□□ 2.54
Limch1Q3UH68 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC30.93■■■□□ 2.54
Limch1Q3UH68 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
Limch1Q3UH68 AL845457.1-201ENSMUST00000197244 68 ntBASIC30.92■■■□□ 2.54
Limch1Q3UH68 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
Limch1Q3UH68 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC30.89■■■□□ 2.53
Limch1Q3UH68 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC30.86■■■□□ 2.53
Limch1Q3UH68 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC30.8■■■□□ 2.52
Retrieved 100 of 76,532 protein–RNA pairs in 8.6 ms