Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC32,62■■■□□ 2,81
Limch1Q3UH68 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC32,62■■■□□ 2,81
Limch1Q3UH68 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC32,61■■■□□ 2,81
Limch1Q3UH68 Gm26115-201ENSMUST00000175605 87 ntBASIC32,58■■■□□ 2,81
Limch1Q3UH68 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC32,52■■■□□ 2,8
Limch1Q3UH68 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC32,5■■■□□ 2,79
Limch1Q3UH68 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC32,47■■■□□ 2,79
Limch1Q3UH68 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC32,46■■■□□ 2,79
Limch1Q3UH68 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC32,45■■■□□ 2,79
Limch1Q3UH68 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC32,45■■■□□ 2,79
Limch1Q3UH68 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC32,43■■■□□ 2,78
Limch1Q3UH68 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC32,42■■■□□ 2,78
Limch1Q3UH68 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC32,4■■■□□ 2,78
Limch1Q3UH68 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC32,4■■■□□ 2,78
Limch1Q3UH68 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32,39■■■□□ 2,78
Limch1Q3UH68 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32,39■■■□□ 2,78
Limch1Q3UH68 Gm8109-201ENSMUST00000194076 746 ntBASIC32,35■■■□□ 2,77
Limch1Q3UH68 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC32,33■■■□□ 2,77
Limch1Q3UH68 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32,32■■■□□ 2,76
Limch1Q3UH68 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC32,31■■■□□ 2,76
Limch1Q3UH68 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC32,31■■■□□ 2,76
Limch1Q3UH68 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC32,26■■■□□ 2,76
Limch1Q3UH68 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC32,25■■■□□ 2,75
Limch1Q3UH68 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC32,24■■■□□ 2,75
Limch1Q3UH68 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC32,19■■■□□ 2,74
Limch1Q3UH68 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC32,19■■■□□ 2,74
Limch1Q3UH68 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC32,16■■■□□ 2,74
Limch1Q3UH68 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC32,11■■■□□ 2,73
Limch1Q3UH68 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC32,07■■■□□ 2,72
Limch1Q3UH68 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2,71
Limch1Q3UH68 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31,99■■■□□ 2,71
Limch1Q3UH68 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC31,98■■■□□ 2,71
Limch1Q3UH68 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC31,95■■■□□ 2,71
Limch1Q3UH68 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC31,95■■■□□ 2,7
Limch1Q3UH68 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC31,9■■■□□ 2,7
Limch1Q3UH68 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC31,89■■■□□ 2,7
Limch1Q3UH68 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC31,82■■■□□ 2,69
Limch1Q3UH68 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC31,81■■■□□ 2,68
Limch1Q3UH68 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC31,77■■■□□ 2,68
Limch1Q3UH68 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC31,77■■■□□ 2,68
Limch1Q3UH68 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC31,76■■■□□ 2,67
Limch1Q3UH68 Gm17082-201ENSMUST00000166043 1091 ntBASIC31,72■■■□□ 2,67
Limch1Q3UH68 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC31,72■■■□□ 2,67
Limch1Q3UH68 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31,7■■■□□ 2,67
Limch1Q3UH68 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC31,69■■■□□ 2,66
Limch1Q3UH68 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC31,68■■■□□ 2,66
Limch1Q3UH68 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC31,68■■■□□ 2,66
Limch1Q3UH68 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC31,66■■■□□ 2,66
Limch1Q3UH68 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31,63■■■□□ 2,65
Limch1Q3UH68 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31,62■■■□□ 2,65
Limch1Q3UH68 Zfp131-207ENSMUST00000224946 1783 ntBASIC31,61■■■□□ 2,65
Limch1Q3UH68 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC31,61■■■□□ 2,65
Limch1Q3UH68 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC31,61■■■□□ 2,65
Limch1Q3UH68 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC31,6■■■□□ 2,65
Limch1Q3UH68 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC31,59■■■□□ 2,65
Limch1Q3UH68 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC31,56■■■□□ 2,64
Limch1Q3UH68 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC31,56■■■□□ 2,64
Limch1Q3UH68 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC31,49■■■□□ 2,63
Limch1Q3UH68 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC31,49■■■□□ 2,63
Limch1Q3UH68 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC31,48■■■□□ 2,63
Limch1Q3UH68 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC31,47■■■□□ 2,63
Limch1Q3UH68 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC31,46■■■□□ 2,63
Limch1Q3UH68 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31,46■■■□□ 2,63
Limch1Q3UH68 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC31,44■■■□□ 2,62
Limch1Q3UH68 Gm27322-201ENSMUST00000184007 104 ntBASIC31,43■■■□□ 2,62
Limch1Q3UH68 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC31,4■■■□□ 2,62
Limch1Q3UH68 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC31,37■■■□□ 2,61
Limch1Q3UH68 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC31,36■■■□□ 2,61
Limch1Q3UH68 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31,33■■■□□ 2,61
Limch1Q3UH68 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31,33■■■□□ 2,61
Limch1Q3UH68 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC31,33■■■□□ 2,61
Limch1Q3UH68 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC31,32■■■□□ 2,6
Limch1Q3UH68 Gm24804-201ENSMUST00000174982 85 ntBASIC31,31■■■□□ 2,6
Limch1Q3UH68 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC31,29■■■□□ 2,6
Limch1Q3UH68 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC31,23■■■□□ 2,59
Limch1Q3UH68 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC31,21■■■□□ 2,59
Limch1Q3UH68 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC31,14■■■□□ 2,58
Limch1Q3UH68 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC31,13■■■□□ 2,57
Limch1Q3UH68 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC31,13■■■□□ 2,57
Limch1Q3UH68 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC31,13■■■□□ 2,57
Limch1Q3UH68 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC31,12■■■□□ 2,57
Limch1Q3UH68 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC31,08■■■□□ 2,57
Limch1Q3UH68 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC31,07■■■□□ 2,56
Limch1Q3UH68 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC31,05■■■□□ 2,56
Limch1Q3UH68 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC31,04■■■□□ 2,56
Limch1Q3UH68 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC31,02■■■□□ 2,56
Limch1Q3UH68 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC31,01■■■□□ 2,55
Limch1Q3UH68 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC30,96■■■□□ 2,55
Limch1Q3UH68 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC30,96■■■□□ 2,55
Limch1Q3UH68 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC30,95■■■□□ 2,55
Limch1Q3UH68 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC30,94■■■□□ 2,54
Limch1Q3UH68 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC30,93■■■□□ 2,54
Limch1Q3UH68 Gm2415-204ENSMUST00000190235 2004 ntBASIC30,93■■■□□ 2,54
Limch1Q3UH68 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC30,93■■■□□ 2,54
Limch1Q3UH68 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC30,92■■■□□ 2,54
Limch1Q3UH68 AL845457.1-201ENSMUST00000197244 68 ntBASIC30,92■■■□□ 2,54
Limch1Q3UH68 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC30,9■■■□□ 2,54
Limch1Q3UH68 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC30,89■■■□□ 2,53
Limch1Q3UH68 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC30,86■■■□□ 2,53
Limch1Q3UH68 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC30,8■■■□□ 2,52
Retrieved 100 of 76,532 protein–RNA pairs in 16,6 ms