Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trbv1A0A0B4J1G7 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC21.24■□□□□ 0.99
Trbv1A0A0B4J1G7 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trbv1A0A0B4J1G7 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trbv1A0A0B4J1G7 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trbv1A0A0B4J1G7 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trbv1A0A0B4J1G7 Gm25238-201ENSMUST00000174914 89 ntBASIC21.18■□□□□ 0.98
Trbv1A0A0B4J1G7 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trbv1A0A0B4J1G7 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Trbv1A0A0B4J1G7 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Trbv1A0A0B4J1G7 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trbv1A0A0B4J1G7 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trbv1A0A0B4J1G7 Gm27325-201ENSMUST00000175467 74 ntBASIC21.08■□□□□ 0.97
Trbv1A0A0B4J1G7 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trbv1A0A0B4J1G7 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
Trbv1A0A0B4J1G7 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
Trbv1A0A0B4J1G7 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC21.01■□□□□ 0.95
Trbv1A0A0B4J1G7 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC21■□□□□ 0.95
Trbv1A0A0B4J1G7 AC153504.1-201ENSMUST00000218379 2290 ntBASIC20.99■□□□□ 0.95
Trbv1A0A0B4J1G7 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trbv1A0A0B4J1G7 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC20.97■□□□□ 0.95
Trbv1A0A0B4J1G7 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trbv1A0A0B4J1G7 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trbv1A0A0B4J1G7 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
Trbv1A0A0B4J1G7 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trbv1A0A0B4J1G7 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trbv1A0A0B4J1G7 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trbv1A0A0B4J1G7 Zxda-201ENSMUST00000117281 2621 ntBASIC20.83■□□□□ 0.93
Trbv1A0A0B4J1G7 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trbv1A0A0B4J1G7 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trbv1A0A0B4J1G7 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trbv1A0A0B4J1G7 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trbv1A0A0B4J1G7 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trbv1A0A0B4J1G7 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trbv1A0A0B4J1G7 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trbv1A0A0B4J1G7 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trbv1A0A0B4J1G7 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC20.71■□□□□ 0.91
Trbv1A0A0B4J1G7 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC20.71■□□□□ 0.91
Trbv1A0A0B4J1G7 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trbv1A0A0B4J1G7 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trbv1A0A0B4J1G7 Gm2415-204ENSMUST00000190235 2004 ntBASIC20.64■□□□□ 0.89
Trbv1A0A0B4J1G7 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trbv1A0A0B4J1G7 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trbv1A0A0B4J1G7 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Trbv1A0A0B4J1G7 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trbv1A0A0B4J1G7 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trbv1A0A0B4J1G7 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trbv1A0A0B4J1G7 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trbv1A0A0B4J1G7 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trbv1A0A0B4J1G7 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC20.59■□□□□ 0.89
Trbv1A0A0B4J1G7 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trbv1A0A0B4J1G7 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trbv1A0A0B4J1G7 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Trbv1A0A0B4J1G7 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Trbv1A0A0B4J1G7 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trbv1A0A0B4J1G7 Rab21-202ENSMUST00000218831 843 ntBASIC20.5■□□□□ 0.87
Trbv1A0A0B4J1G7 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trbv1A0A0B4J1G7 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Trbv1A0A0B4J1G7 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trbv1A0A0B4J1G7 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trbv1A0A0B4J1G7 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20.47■□□□□ 0.87
Trbv1A0A0B4J1G7 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trbv1A0A0B4J1G7 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trbv1A0A0B4J1G7 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trbv1A0A0B4J1G7 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trbv1A0A0B4J1G7 Gm9905-201ENSMUST00000065740 1845 ntBASIC20.45■□□□□ 0.86
Trbv1A0A0B4J1G7 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trbv1A0A0B4J1G7 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trbv1A0A0B4J1G7 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trbv1A0A0B4J1G7 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trbv1A0A0B4J1G7 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trbv1A0A0B4J1G7 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trbv1A0A0B4J1G7 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC20.39■□□□□ 0.85
Trbv1A0A0B4J1G7 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trbv1A0A0B4J1G7 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trbv1A0A0B4J1G7 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trbv1A0A0B4J1G7 Gm6658-202ENSMUST00000209493 1885 ntBASIC20.37■□□□□ 0.85
Trbv1A0A0B4J1G7 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC20.37■□□□□ 0.85
Trbv1A0A0B4J1G7 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trbv1A0A0B4J1G7 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC20.35■□□□□ 0.85
Trbv1A0A0B4J1G7 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trbv1A0A0B4J1G7 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trbv1A0A0B4J1G7 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trbv1A0A0B4J1G7 Gm6206-201ENSMUST00000133472 2199 ntBASIC20.32■□□□□ 0.84
Trbv1A0A0B4J1G7 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trbv1A0A0B4J1G7 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trbv1A0A0B4J1G7 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trbv1A0A0B4J1G7 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC20.28■□□□□ 0.84
Trbv1A0A0B4J1G7 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC20.28■□□□□ 0.84
Trbv1A0A0B4J1G7 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trbv1A0A0B4J1G7 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trbv1A0A0B4J1G7 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trbv1A0A0B4J1G7 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trbv1A0A0B4J1G7 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trbv1A0A0B4J1G7 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trbv1A0A0B4J1G7 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trbv1A0A0B4J1G7 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Trbv1A0A0B4J1G7 Gm25262-201ENSMUST00000174934 133 ntBASIC20.2■□□□□ 0.82
Trbv1A0A0B4J1G7 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trbv1A0A0B4J1G7 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 77.3 ms