Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Gm28760-201ENSMUST00000185995 736 ntBASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lima1Q9ERG0 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Gm31326-201ENSMUST00000191856 1048 ntBASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Gm43094-201ENSMUST00000196549 921 ntBASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Gm24447-201ENSMUST00000083977 338 ntBASIC12.78□□□□□ -0.36
Lima1Q9ERG0 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Gm3365-201ENSMUST00000216296 1480 ntBASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Gm7104-201ENSMUST00000179741 2532 ntBASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lima1Q9ERG0 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Lima1Q9ERG0 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Lima1Q9ERG0 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Lima1Q9ERG0 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Lima1Q9ERG0 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Lima1Q9ERG0 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Lima1Q9ERG0 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Lima1Q9ERG0 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Lima1Q9ERG0 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Lima1Q9ERG0 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Lima1Q9ERG0 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Lima1Q9ERG0 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Lima1Q9ERG0 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Lima1Q9ERG0 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Gm16215-201ENSMUST00000161990 637 ntBASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Gm42612-201ENSMUST00000197986 623 ntBASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Gm19931-201ENSMUST00000198920 368 ntBASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Gm43170-201ENSMUST00000199827 612 ntBASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Gm17330-201ENSMUST00000221047 165 ntBASIC12.77□□□□□ -0.37
Lima1Q9ERG0 AC124732.1-201ENSMUST00000221551 910 ntBASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Gm27177-202ENSMUST00000183514 2703 ntBASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lima1Q9ERG0 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms