Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC16.7■□□□□ 0.26
Trim28Q62318 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC16.7■□□□□ 0.26
Trim28Q62318 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC16.7■□□□□ 0.26
Trim28Q62318 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC16.7■□□□□ 0.26
Trim28Q62318 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Trim28Q62318 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Trim28Q62318 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Trim28Q62318 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Trim28Q62318 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC16.69■□□□□ 0.26
Trim28Q62318 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Trim28Q62318 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC16.69■□□□□ 0.26
Trim28Q62318 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Trim28Q62318 Gm2383-201ENSMUST00000181461 807 ntBASIC16.69■□□□□ 0.26
Trim28Q62318 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC16.69■□□□□ 0.26
Trim28Q62318 Gm42937-201ENSMUST00000197360 752 ntBASIC16.69■□□□□ 0.26
Trim28Q62318 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC16.69■□□□□ 0.26
Trim28Q62318 Gm10371-202ENSMUST00000228010 1081 ntBASIC16.69■□□□□ 0.26
Trim28Q62318 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Trim28Q62318 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Gm10076-201ENSMUST00000073238 384 ntBASIC16.69■□□□□ 0.26
Trim28Q62318 Gm42840-201ENSMUST00000200303 2251 ntBASIC16.69■□□□□ 0.26
Trim28Q62318 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC16.69■□□□□ 0.26
Trim28Q62318 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Trim28Q62318 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Trim28Q62318 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim28Q62318 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Trim28Q62318 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Trim28Q62318 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC16.68■□□□□ 0.26
Trim28Q62318 Gm5638-201ENSMUST00000118618 1258 ntBASIC16.68■□□□□ 0.26
Trim28Q62318 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC16.68■□□□□ 0.26
Trim28Q62318 Gm12997-201ENSMUST00000120207 640 ntBASIC16.68■□□□□ 0.26
Trim28Q62318 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Gm18304-201ENSMUST00000189162 546 ntBASIC16.68■□□□□ 0.26
Trim28Q62318 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 CT573034.1-201ENSMUST00000222983 313 ntBASIC16.68■□□□□ 0.26
Trim28Q62318 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Trim28Q62318 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
Trim28Q62318 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim28Q62318 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Trim28Q62318 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC16.67■□□□□ 0.26
Trim28Q62318 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Trim28Q62318 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Gm6210-201ENSMUST00000204734 1942 ntBASIC16.67■□□□□ 0.26
Trim28Q62318 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Trim28Q62318 Gm14760-201ENSMUST00000121831 999 ntBASIC16.67■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 56 ms