Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC14.32□□□□□ -0.12
Ift88Q61371 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Gm6210-201ENSMUST00000204734 1942 ntBASIC14.32□□□□□ -0.12
Ift88Q61371 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Ift88Q61371 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Adra1a-206ENSMUST00000225182 2337 ntBASIC14.32□□□□□ -0.12
Ift88Q61371 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC14.32□□□□□ -0.12
Ift88Q61371 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Ift88Q61371 Ldb3-207ENSMUST00000227819 1499 ntBASIC14.31□□□□□ -0.12
Ift88Q61371 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Ift88Q61371 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC14.31□□□□□ -0.12
Ift88Q61371 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC14.31□□□□□ -0.12
Ift88Q61371 Gm44872-201ENSMUST00000207864 420 ntBASIC14.31□□□□□ -0.12
Ift88Q61371 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Ift88Q61371 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Ift88Q61371 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ift88Q61371 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC14.3□□□□□ -0.12
Ift88Q61371 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC14.3□□□□□ -0.12
Ift88Q61371 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC14.3□□□□□ -0.12
Ift88Q61371 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Ift88Q61371 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Mir686-201ENSMUST00000102174 109 ntBASIC14.3□□□□□ -0.12
Ift88Q61371 Ldha-ps-201ENSMUST00000119390 995 ntBASIC14.3□□□□□ -0.12
Ift88Q61371 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC14.3□□□□□ -0.12
Ift88Q61371 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC14.3□□□□□ -0.12
Ift88Q61371 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Ift88Q61371 Gm38297-201ENSMUST00000195122 1057 ntBASIC14.3□□□□□ -0.12
Ift88Q61371 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC14.3□□□□□ -0.12
Ift88Q61371 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC14.3□□□□□ -0.12
Ift88Q61371 AC122305.4-201ENSMUST00000216159 1206 ntBASIC14.3□□□□□ -0.12
Ift88Q61371 AC156560.2-201ENSMUST00000221232 264 ntBASIC14.3□□□□□ -0.12
Ift88Q61371 Gm19220-201ENSMUST00000222682 803 ntBASIC14.3□□□□□ -0.12
Ift88Q61371 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Gm5867-201ENSMUST00000063197 592 ntBASIC14.3□□□□□ -0.12
Ift88Q61371 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Ift88Q61371 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC14.3□□□□□ -0.12
Ift88Q61371 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Ift88Q61371 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ift88Q61371 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms