Protein–RNA interactions for Protein: P79621

Ciita, MHC class II transactivator, mousemouse

Predictions only

Length 1,155 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CiitaP79621 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CiitaP79621 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CiitaP79621 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CiitaP79621 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
CiitaP79621 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CiitaP79621 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CiitaP79621 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CiitaP79621 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CiitaP79621 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CiitaP79621 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC14.02□□□□□ -0.17
CiitaP79621 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CiitaP79621 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC14.02□□□□□ -0.17
CiitaP79621 Gm15370-201ENSMUST00000117158 253 ntBASIC14.02□□□□□ -0.17
CiitaP79621 Gm12241-201ENSMUST00000118330 726 ntBASIC14.02□□□□□ -0.17
CiitaP79621 Gm13342-201ENSMUST00000121055 207 ntBASIC14.02□□□□□ -0.17
CiitaP79621 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CiitaP79621 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC14.02□□□□□ -0.17
CiitaP79621 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CiitaP79621 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CiitaP79621 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CiitaP79621 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC14.02□□□□□ -0.17
CiitaP79621 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC14.02□□□□□ -0.17
CiitaP79621 Gm45865-201ENSMUST00000211815 945 ntBASIC14.02□□□□□ -0.17
CiitaP79621 Cts7-204ENSMUST00000225321 1257 ntBASIC14.02□□□□□ -0.17
CiitaP79621 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CiitaP79621 Mir339-201ENSMUST00000083659 96 ntBASIC14.02□□□□□ -0.17
CiitaP79621 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CiitaP79621 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.17
CiitaP79621 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CiitaP79621 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CiitaP79621 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CiitaP79621 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CiitaP79621 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CiitaP79621 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC14.02□□□□□ -0.17
CiitaP79621 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CiitaP79621 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CiitaP79621 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CiitaP79621 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC14.01□□□□□ -0.17
CiitaP79621 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CiitaP79621 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CiitaP79621 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC14.01□□□□□ -0.17
CiitaP79621 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC14.01□□□□□ -0.17
CiitaP79621 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Gm43758-201ENSMUST00000199500 367 ntBASIC14.01□□□□□ -0.17
CiitaP79621 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CiitaP79621 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC14.01□□□□□ -0.17
CiitaP79621 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CiitaP79621 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC14.01□□□□□ -0.17
CiitaP79621 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CiitaP79621 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CiitaP79621 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC14.01□□□□□ -0.17
CiitaP79621 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CiitaP79621 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CiitaP79621 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC14.01□□□□□ -0.17
CiitaP79621 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC14□□□□□ -0.17
CiitaP79621 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
CiitaP79621 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC14□□□□□ -0.17
CiitaP79621 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC14□□□□□ -0.17
CiitaP79621 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CiitaP79621 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CiitaP79621 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CiitaP79621 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CiitaP79621 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CiitaP79621 Gm4986-201ENSMUST00000119731 549 ntBASIC14□□□□□ -0.17
CiitaP79621 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CiitaP79621 Gm16296-201ENSMUST00000159905 325 ntBASIC14□□□□□ -0.17
CiitaP79621 Gm6652-201ENSMUST00000186414 1070 ntBASIC14□□□□□ -0.17
CiitaP79621 Gm7895-201ENSMUST00000187459 1173 ntBASIC14□□□□□ -0.17
CiitaP79621 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC14□□□□□ -0.17
CiitaP79621 Gm6621-201ENSMUST00000193251 772 ntBASIC14□□□□□ -0.17
CiitaP79621 Gm43822-201ENSMUST00000200285 476 ntBASIC14□□□□□ -0.17
CiitaP79621 Gm7783-201ENSMUST00000204795 781 ntBASIC14□□□□□ -0.17
CiitaP79621 Gm6334-201ENSMUST00000207083 228 ntBASIC14□□□□□ -0.17
CiitaP79621 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC14□□□□□ -0.17
CiitaP79621 Morn2-202ENSMUST00000227729 656 ntBASIC14□□□□□ -0.17
CiitaP79621 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
CiitaP79621 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CiitaP79621 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CiitaP79621 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC14□□□□□ -0.17
CiitaP79621 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC14□□□□□ -0.17
CiitaP79621 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC14□□□□□ -0.17
CiitaP79621 Gm6992-201ENSMUST00000217973 1607 ntBASIC14□□□□□ -0.17
CiitaP79621 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC14□□□□□ -0.17
CiitaP79621 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 50.1 ms