Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col1a1P11087 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Gm13812-201ENSMUST00000118061 1347 ntBASIC14.96□□□□□ -0.01
Col1a1P11087 Gm13810-201ENSMUST00000118584 1347 ntBASIC14.96□□□□□ -0.01
Col1a1P11087 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Col1a1P11087 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Col1a1P11087 Gm12165-201ENSMUST00000117047 342 ntBASIC14.96□□□□□ -0.01
Col1a1P11087 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC14.96□□□□□ -0.01
Col1a1P11087 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC14.96□□□□□ -0.01
Col1a1P11087 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Col1a1P11087 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Col1a1P11087 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col1a1P11087 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col1a1P11087 Gm6580-201ENSMUST00000117504 1357 ntBASIC14.96□□□□□ -0.02
Col1a1P11087 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col1a1P11087 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col1a1P11087 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col1a1P11087 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
Col1a1P11087 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
Col1a1P11087 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC14.95□□□□□ -0.02
Col1a1P11087 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC14.95□□□□□ -0.02
Col1a1P11087 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Col1a1P11087 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC14.95□□□□□ -0.02
Col1a1P11087 Gm15703-201ENSMUST00000120250 880 ntBASIC14.95□□□□□ -0.02
Col1a1P11087 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC14.95□□□□□ -0.02
Col1a1P11087 H2-Q3-201ENSMUST00000172583 608 ntBASIC14.95□□□□□ -0.02
Col1a1P11087 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC14.95□□□□□ -0.02
Col1a1P11087 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
Col1a1P11087 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Col1a1P11087 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC14.95□□□□□ -0.02
Col1a1P11087 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC14.95□□□□□ -0.02
Col1a1P11087 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Gm45242-201ENSMUST00000210666 2129 ntBASIC14.95□□□□□ -0.02
Col1a1P11087 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
Col1a1P11087 Gm12501-201ENSMUST00000119163 529 ntBASIC14.95□□□□□ -0.02
Col1a1P11087 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC14.95□□□□□ -0.02
Col1a1P11087 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC14.95□□□□□ -0.02
Col1a1P11087 Gm17391-201ENSMUST00000171036 126 ntBASIC14.95□□□□□ -0.02
Col1a1P11087 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC14.95□□□□□ -0.02
Col1a1P11087 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 AC154252.2-201ENSMUST00000223593 767 ntBASIC14.95□□□□□ -0.02
Col1a1P11087 AC138604.1-201ENSMUST00000226969 739 ntBASIC14.95□□□□□ -0.02
Col1a1P11087 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col1a1P11087 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
Col1a1P11087 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col1a1P11087 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Col1a1P11087 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col1a1P11087 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col1a1P11087 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col1a1P11087 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col1a1P11087 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col1a1P11087 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col1a1P11087 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col1a1P11087 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col1a1P11087 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col1a1P11087 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Col1a1P11087 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col1a1P11087 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Col1a1P11087 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Col1a1P11087 Gm8194-201ENSMUST00000159783 859 ntBASIC14.94□□□□□ -0.02
Col1a1P11087 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC14.94□□□□□ -0.02
Col1a1P11087 Gm9540-201ENSMUST00000188230 478 ntBASIC14.94□□□□□ -0.02
Col1a1P11087 Gm42937-201ENSMUST00000197360 752 ntBASIC14.94□□□□□ -0.02
Col1a1P11087 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC14.94□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms