Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Gm43823-201ENSMUST00000197391 1808 ntBASIC15.5■□□□□ 0.07
Ube4aE9Q735 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 CT025610.1-201ENSMUST00000224552 1786 ntBASIC15.49■□□□□ 0.07
Ube4aE9Q735 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Ube4aE9Q735 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Ube4aE9Q735 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ube4aE9Q735 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ube4aE9Q735 AC126444.1-201ENSMUST00000225938 1768 ntBASIC15.47■□□□□ 0.07
Ube4aE9Q735 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC15.47■□□□□ 0.07
Ube4aE9Q735 Gm14999-201ENSMUST00000121039 624 ntBASIC15.47■□□□□ 0.07
Ube4aE9Q735 Gm5863-201ENSMUST00000121760 1008 ntBASIC15.47■□□□□ 0.07
Ube4aE9Q735 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Gm26361-201ENSMUST00000158868 186 ntBASIC15.47■□□□□ 0.07
Ube4aE9Q735 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
Ube4aE9Q735 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms