Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Sf3b1Q99NB9 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Sf3b1Q99NB9 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Mir7221-201ENSMUST00000184009 72 ntBASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Gm38241-201ENSMUST00000192641 898 ntBASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sf3b1Q99NB9 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Gm10434-201ENSMUST00000101158 471 ntBASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Mir874-201ENSMUST00000104769 76 ntBASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Gm8738-201ENSMUST00000172606 329 ntBASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Gm27320-201ENSMUST00000184892 109 ntBASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Gm37259-201ENSMUST00000193903 849 ntBASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Ighv8-10-201ENSMUST00000199579 358 ntBASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Gm21769-201ENSMUST00000211922 111 ntBASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Morn2-202ENSMUST00000227729 656 ntBASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Gm45242-201ENSMUST00000210666 2129 ntBASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Sf3b1Q99NB9 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Gm22121-201ENSMUST00000175148 54 ntBASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Gm4857-201ENSMUST00000192718 785 ntBASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Gm4959-201ENSMUST00000197271 1044 ntBASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Gm7118-201ENSMUST00000200167 1003 ntBASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Sf3b1Q99NB9 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC13.74□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 52.3 ms