Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Mir7085-201ENSMUST00000184353 66 ntBASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Rubie-203ENSMUST00000227803 2430 ntBASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Gm8798-201ENSMUST00000211877 1661 ntBASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Gm43045-201ENSMUST00000198725 2095 ntBASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Adra1a-206ENSMUST00000225182 2337 ntBASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col28a1Q2UY11 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Gm13829-201ENSMUST00000119600 138 ntBASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Gm15393-201ENSMUST00000120499 219 ntBASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Gm9229-201ENSMUST00000222777 126 ntBASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Gm9797-201ENSMUST00000052902 613 ntBASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Col28a1Q2UY11 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms