Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Col6a1Q04857 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Col6a1Q04857 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 AC154262.2-201ENSMUST00000224310 2293 ntBASIC14.34□□□□□ -0.11
Col6a1Q04857 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Gm38049-201ENSMUST00000195698 1372 ntBASIC14.34□□□□□ -0.11
Col6a1Q04857 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC14.34□□□□□ -0.11
Col6a1Q04857 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col6a1Q04857 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
Col6a1Q04857 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC14.33□□□□□ -0.11
Col6a1Q04857 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col6a1Q04857 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
Col6a1Q04857 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Col6a1Q04857 Gm13665-201ENSMUST00000120830 528 ntBASIC14.33□□□□□ -0.12
Col6a1Q04857 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC14.33□□□□□ -0.12
Col6a1Q04857 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Col6a1Q04857 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Gm7593-201ENSMUST00000187246 644 ntBASIC14.33□□□□□ -0.12
Col6a1Q04857 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC14.33□□□□□ -0.12
Col6a1Q04857 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC14.33□□□□□ -0.12
Col6a1Q04857 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC14.33□□□□□ -0.12
Col6a1Q04857 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC14.33□□□□□ -0.12
Col6a1Q04857 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC14.33□□□□□ -0.12
Col6a1Q04857 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC14.33□□□□□ -0.12
Col6a1Q04857 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Gm37133-201ENSMUST00000192705 1922 ntBASIC14.33□□□□□ -0.12
Col6a1Q04857 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Col6a1Q04857 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col6a1Q04857 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Col6a1Q04857 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Col6a1Q04857 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC14.32□□□□□ -0.12
Col6a1Q04857 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
Col6a1Q04857 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Col6a1Q04857 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC14.32□□□□□ -0.12
Col6a1Q04857 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC14.32□□□□□ -0.12
Col6a1Q04857 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Col6a1Q04857 Gm27023-201ENSMUST00000182372 285 ntBASIC14.32□□□□□ -0.12
Col6a1Q04857 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC14.32□□□□□ -0.12
Col6a1Q04857 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC14.32□□□□□ -0.12
Col6a1Q04857 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC14.32□□□□□ -0.12
Col6a1Q04857 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC14.32□□□□□ -0.12
Col6a1Q04857 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col6a1Q04857 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC14.31□□□□□ -0.12
Col6a1Q04857 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Gm8337-201ENSMUST00000187358 1938 ntBASIC14.31□□□□□ -0.12
Col6a1Q04857 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 58.3 ms