Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Gm14130-201ENSMUST00000118417 987 ntBASIC15.52■□□□□ 0.08
Ube4aE9Q735 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC15.52■□□□□ 0.08
Ube4aE9Q735 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Gm9678-201ENSMUST00000198979 1149 ntBASIC15.52■□□□□ 0.08
Ube4aE9Q735 Gm18212-201ENSMUST00000211678 889 ntBASIC15.52■□□□□ 0.08
Ube4aE9Q735 AC161537.1-201ENSMUST00000226199 1015 ntBASIC15.52■□□□□ 0.08
Ube4aE9Q735 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ube4aE9Q735 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Ube4aE9Q735 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC15.52■□□□□ 0.07
Ube4aE9Q735 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ube4aE9Q735 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.52■□□□□ 0.07
Ube4aE9Q735 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ube4aE9Q735 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Ube4aE9Q735 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Ube4aE9Q735 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ube4aE9Q735 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ube4aE9Q735 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Gm9924-202ENSMUST00000192760 2311 ntBASIC15.51■□□□□ 0.07
Ube4aE9Q735 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Gm4760-201ENSMUST00000119663 1030 ntBASIC15.51■□□□□ 0.07
Ube4aE9Q735 Gm24990-201ENSMUST00000157406 323 ntBASIC15.51■□□□□ 0.07
Ube4aE9Q735 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Gm4864-201ENSMUST00000219894 1461 ntBASIC15.51■□□□□ 0.07
Ube4aE9Q735 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ube4aE9Q735 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Gm37912-201ENSMUST00000191895 3076 ntBASIC15.5■□□□□ 0.07
Ube4aE9Q735 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Mir5132-201ENSMUST00000175166 71 ntBASIC15.5■□□□□ 0.07
Ube4aE9Q735 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Gm27023-201ENSMUST00000182372 285 ntBASIC15.5■□□□□ 0.07
Ube4aE9Q735 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Gm2260-201ENSMUST00000184965 657 ntBASIC15.5■□□□□ 0.07
Ube4aE9Q735 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Gm43068-201ENSMUST00000201095 1273 ntBASIC15.5■□□□□ 0.07
Ube4aE9Q735 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Ube4aE9Q735 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 75.5 ms