Protein–RNA interactions for Protein: E0CXC2

Gm28043, E3 ubiquitin-protein ligase RNF8, mousemouse

Predictions only

Length 719 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gm28043E0CXC2 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Gm28043E0CXC2 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Gm28043E0CXC2 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Gm28043E0CXC2 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Gm28043E0CXC2 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Gm28043E0CXC2 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Gm28043E0CXC2 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Gm28043E0CXC2 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Gm28043E0CXC2 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Gm28043E0CXC2 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Gm28043E0CXC2 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Gm28043E0CXC2 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Gm28043E0CXC2 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Gm28043E0CXC2 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Gm28043E0CXC2 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 AC139350.1-201ENSMUST00000227064 1594 ntBASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Gm26464-201ENSMUST00000157094 305 ntBASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Gm24447-201ENSMUST00000083977 338 ntBASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 CT573086.2-201ENSMUST00000227277 4992 ntBASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Gm28043E0CXC2 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC13.02□□□□□ -0.32
Gm28043E0CXC2 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Gm28043E0CXC2 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
Gm28043E0CXC2 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Gm28043E0CXC2 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Gm28043E0CXC2 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Gm28043E0CXC2 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Gm28043E0CXC2 Matn2-203ENSMUST00000226766 3252 ntBASIC13.02□□□□□ -0.32
Gm28043E0CXC2 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC13.02□□□□□ -0.32
Gm28043E0CXC2 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Gm28043E0CXC2 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Gm28043E0CXC2 Gm4782-201ENSMUST00000168705 2046 ntBASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 CT025535.1-201ENSMUST00000227172 491 ntBASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Gm5161-201ENSMUST00000075243 853 ntBASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Gm28043E0CXC2 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 80.4 ms