Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 CT025610.1-201ENSMUST00000224552 1786 ntBASIC12.69□□□□□ -0.38
Chd3B1AR17 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC12.69□□□□□ -0.38
Chd3B1AR17 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC12.69□□□□□ -0.38
Chd3B1AR17 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Gm14371-201ENSMUST00000138925 1518 ntBASIC12.69□□□□□ -0.38
Chd3B1AR17 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC12.69□□□□□ -0.38
Chd3B1AR17 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC12.69□□□□□ -0.38
Chd3B1AR17 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC12.69□□□□□ -0.38
Chd3B1AR17 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC12.69□□□□□ -0.38
Chd3B1AR17 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC12.69□□□□□ -0.38
Chd3B1AR17 Gm9368-201ENSMUST00000219348 831 ntBASIC12.69□□□□□ -0.38
Chd3B1AR17 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Chd3B1AR17 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Chd3B1AR17 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Chd3B1AR17 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Chd3B1AR17 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC12.68□□□□□ -0.38
Chd3B1AR17 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Chd3B1AR17 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC12.68□□□□□ -0.38
Chd3B1AR17 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC12.68□□□□□ -0.38
Chd3B1AR17 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC12.68□□□□□ -0.38
Chd3B1AR17 AC108416.1-202ENSMUST00000228927 1201 ntBASIC12.68□□□□□ -0.38
Chd3B1AR17 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Gm45638-201ENSMUST00000211507 2878 ntBASIC12.68□□□□□ -0.38
Chd3B1AR17 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Gm42863-201ENSMUST00000197875 2958 ntBASIC12.68□□□□□ -0.38
Chd3B1AR17 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Chd3B1AR17 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Chd3B1AR17 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC12.68□□□□□ -0.38
Chd3B1AR17 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC12.68□□□□□ -0.38
Chd3B1AR17 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
Chd3B1AR17 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Chd3B1AR17 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC12.68□□□□□ -0.38
Chd3B1AR17 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Gm19963-201ENSMUST00000208413 1255 ntBASIC12.68□□□□□ -0.38
Chd3B1AR17 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Chd3B1AR17 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Chd3B1AR17 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC12.67□□□□□ -0.38
Chd3B1AR17 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Gm8228-201ENSMUST00000189949 2192 ntBASIC12.67□□□□□ -0.38
Chd3B1AR17 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC12.67□□□□□ -0.38
Chd3B1AR17 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC12.67□□□□□ -0.38
Chd3B1AR17 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC12.67□□□□□ -0.38
Chd3B1AR17 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Gm24526-201ENSMUST00000082921 158 ntBASIC12.67□□□□□ -0.38
Chd3B1AR17 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC12.67□□□□□ -0.38
Chd3B1AR17 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms