Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm3890-201ENSMUST00000182416 207 ntBASIC15.32■□□□□ 0.04
Trim56Q80VI1 Gm38002-201ENSMUST00000193255 180 ntBASIC15.32■□□□□ 0.04
Trim56Q80VI1 Gm42693-201ENSMUST00000196779 631 ntBASIC15.32■□□□□ 0.04
Trim56Q80VI1 Gm45880-201ENSMUST00000213041 853 ntBASIC15.32■□□□□ 0.04
Trim56Q80VI1 Gm18041-201ENSMUST00000218210 618 ntBASIC15.32■□□□□ 0.04
Trim56Q80VI1 CU024892.2-201ENSMUST00000224608 832 ntBASIC15.32■□□□□ 0.04
Trim56Q80VI1 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Trim56Q80VI1 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC15.32■□□□□ 0.04
Trim56Q80VI1 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Gm38094-201ENSMUST00000195864 2978 ntBASIC15.31■□□□□ 0.04
Trim56Q80VI1 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Gm43416-201ENSMUST00000201916 1015 ntBASIC15.31■□□□□ 0.04
Trim56Q80VI1 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC15.31■□□□□ 0.04
Trim56Q80VI1 AC069562.3-201ENSMUST00000225387 587 ntBASIC15.31■□□□□ 0.04
Trim56Q80VI1 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC15.31■□□□□ 0.04
Trim56Q80VI1 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trim56Q80VI1 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Trav4d-2-201ENSMUST00000120914 335 ntBASIC15.3■□□□□ 0.04
Trim56Q80VI1 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim56Q80VI1 AC133598.1-201ENSMUST00000224327 660 ntBASIC15.3■□□□□ 0.04
Trim56Q80VI1 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Gm9899-201ENSMUST00000065519 555 ntBASIC15.3■□□□□ 0.04
Trim56Q80VI1 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim56Q80VI1 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC15.29■□□□□ 0.04
Trim56Q80VI1 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC15.29■□□□□ 0.04
Trim56Q80VI1 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC15.29■□□□□ 0.04
Trim56Q80VI1 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Gm38158-201ENSMUST00000194617 339 ntBASIC15.29■□□□□ 0.04
Trim56Q80VI1 Gm43133-201ENSMUST00000197472 463 ntBASIC15.29■□□□□ 0.04
Trim56Q80VI1 Gm43118-201ENSMUST00000199149 775 ntBASIC15.29■□□□□ 0.04
Trim56Q80VI1 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Mir339-201ENSMUST00000083659 96 ntBASIC15.29■□□□□ 0.04
Trim56Q80VI1 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 73.7 ms