Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Gm25053-202ENSMUST00000199731 132 ntBASIC19.49■□□□□ 0.71
Col17a1Q07563 Gm9204-201ENSMUST00000212641 947 ntBASIC19.49■□□□□ 0.71
Col17a1Q07563 Tmod3-205ENSMUST00000215821 898 ntTSL 3 BASIC19.49■□□□□ 0.71
Col17a1Q07563 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC19.49■□□□□ 0.71
Col17a1Q07563 Izumo1r-202ENSMUST00000069408 1172 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col17a1Q07563 Ccm2-203ENSMUST00000109722 1760 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col17a1Q07563 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
Col17a1Q07563 5330413D20Rik-201ENSMUST00000208649 1416 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col17a1Q07563 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col17a1Q07563 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col17a1Q07563 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC19.49■□□□□ 0.71
Col17a1Q07563 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC19.48■□□□□ 0.71
Col17a1Q07563 Tmem91-203ENSMUST00000108405 550 ntTSL 3 BASIC19.48■□□□□ 0.71
Col17a1Q07563 Nnmt-202ENSMUST00000119426 912 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Col17a1Q07563 Gm45575-201ENSMUST00000210283 548 ntBASIC19.48■□□□□ 0.71
Col17a1Q07563 Ebi3-201ENSMUST00000003274 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Vmn1r44-201ENSMUST00000089420 1108 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Col17a1Q07563 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Gm18198-201ENSMUST00000204986 1551 ntBASIC19.48■□□□□ 0.71
Col17a1Q07563 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC19.48■□□□□ 0.71
Col17a1Q07563 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Mrps23-201ENSMUST00000024486 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Col17a1Q07563 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Uqcrc2-201ENSMUST00000033176 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Slc40a1-201ENSMUST00000027137 3370 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Gm26286-201ENSMUST00000104166 134 ntBASIC19.48■□□□□ 0.71
Col17a1Q07563 Gm24279-201ENSMUST00000104236 131 ntBASIC19.48■□□□□ 0.71
Col17a1Q07563 Gm13445-201ENSMUST00000121664 307 ntBASIC19.48■□□□□ 0.71
Col17a1Q07563 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Col17a1Q07563 Gm28651-201ENSMUST00000185335 644 ntTSL 3 BASIC19.48■□□□□ 0.71
Col17a1Q07563 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC19.48■□□□□ 0.71
Col17a1Q07563 Gm7238-201ENSMUST00000206467 973 ntBASIC19.48■□□□□ 0.71
Col17a1Q07563 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Tex46-201ENSMUST00000046647 683 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col17a1Q07563 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
Col17a1Q07563 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col17a1Q07563 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Col17a1Q07563 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
Col17a1Q07563 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Col17a1Q07563 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col17a1Q07563 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC19.47■□□□□ 0.71
Col17a1Q07563 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Col17a1Q07563 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Col17a1Q07563 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col17a1Q07563 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC19.47■□□□□ 0.71
Col17a1Q07563 Gm13171-201ENSMUST00000117233 391 ntBASIC19.47■□□□□ 0.71
Col17a1Q07563 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col17a1Q07563 4930555K19Rik-201ENSMUST00000060066 171 ntBASIC19.47■□□□□ 0.71
Col17a1Q07563 Mir339-201ENSMUST00000083659 96 ntBASIC19.47■□□□□ 0.71
Col17a1Q07563 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col17a1Q07563 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col17a1Q07563 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.46■□□□□ 0.71
Col17a1Q07563 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Col17a1Q07563 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col17a1Q07563 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col17a1Q07563 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col17a1Q07563 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col17a1Q07563 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col17a1Q07563 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col17a1Q07563 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col17a1Q07563 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col17a1Q07563 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col17a1Q07563 Cidec-203ENSMUST00000113091 785 ntAPPRIS ALT1 TSL 3 BASIC19.46■□□□□ 0.71
Col17a1Q07563 Gm11663-201ENSMUST00000117888 290 ntBASIC19.46■□□□□ 0.71
Col17a1Q07563 Slfn5os-201ENSMUST00000127074 574 ntTSL 2 BASIC19.46■□□□□ 0.71
Col17a1Q07563 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC19.46■□□□□ 0.71
Col17a1Q07563 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC19.46■□□□□ 0.71
Col17a1Q07563 Gm18776-201ENSMUST00000188833 654 ntBASIC19.46■□□□□ 0.71
Col17a1Q07563 Gm42629-201ENSMUST00000199063 1102 ntBASIC19.46■□□□□ 0.71
Col17a1Q07563 Gm45094-201ENSMUST00000207013 617 ntBASIC19.46■□□□□ 0.71
Col17a1Q07563 Cklf-210ENSMUST00000212939 737 ntAPPRIS ALT2 TSL 3 BASIC19.46■□□□□ 0.71
Col17a1Q07563 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC19.46■□□□□ 0.71
Col17a1Q07563 AC142266.1-201ENSMUST00000228107 415 ntBASIC19.46■□□□□ 0.71
Col17a1Q07563 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col17a1Q07563 Prok2-201ENSMUST00000008273 594 ntTSL 3 BASIC19.46■□□□□ 0.71
Col17a1Q07563 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col17a1Q07563 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col17a1Q07563 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC19.46■□□□□ 0.71
Col17a1Q07563 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Col17a1Q07563 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col17a1Q07563 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col17a1Q07563 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col17a1Q07563 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col17a1Q07563 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms