Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Cdh11P55288 AC154527.2-201ENSMUST00000225256 1466 ntBASIC11.87□□□□□ -0.51
Cdh11P55288 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdh11P55288 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdh11P55288 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Cdh11P55288 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Cdh11P55288 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdh11P55288 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdh11P55288 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdh11P55288 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Cdh11P55288 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdh11P55288 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdh11P55288 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
Cdh11P55288 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Cdh11P55288 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
Cdh11P55288 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Cdh11P55288 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC11.86□□□□□ -0.51
Cdh11P55288 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Gm15240-201ENSMUST00000118156 720 ntBASIC11.86□□□□□ -0.51
Cdh11P55288 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC11.86□□□□□ -0.51
Cdh11P55288 Gm7558-201ENSMUST00000193221 1165 ntBASIC11.86□□□□□ -0.51
Cdh11P55288 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC11.86□□□□□ -0.51
Cdh11P55288 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC11.86□□□□□ -0.51
Cdh11P55288 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdh11P55288 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC11.86□□□□□ -0.51
Cdh11P55288 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Cdh11P55288 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC11.85□□□□□ -0.51
Cdh11P55288 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Mir692-1-201ENSMUST00000102263 109 ntBASIC11.85□□□□□ -0.51
Cdh11P55288 Gm11557-201ENSMUST00000120200 1008 ntBASIC11.85□□□□□ -0.51
Cdh11P55288 Gm15806-201ENSMUST00000120696 955 ntBASIC11.85□□□□□ -0.51
Cdh11P55288 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC11.85□□□□□ -0.51
Cdh11P55288 Gm8927-201ENSMUST00000181978 981 ntBASIC11.85□□□□□ -0.51
Cdh11P55288 Gm8602-201ENSMUST00000184045 607 ntBASIC11.85□□□□□ -0.51
Cdh11P55288 Gm27701-201ENSMUST00000184498 110 ntBASIC11.85□□□□□ -0.51
Cdh11P55288 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC11.85□□□□□ -0.51
Cdh11P55288 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC11.85□□□□□ -0.51
Cdh11P55288 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC11.85□□□□□ -0.51
Cdh11P55288 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC11.85□□□□□ -0.51
Cdh11P55288 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
Cdh11P55288 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Gm3222-201ENSMUST00000071282 990 ntBASIC11.85□□□□□ -0.51
Cdh11P55288 Gm3695-201ENSMUST00000087222 1009 ntBASIC11.85□□□□□ -0.51
Cdh11P55288 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC11.85□□□□□ -0.51
Cdh11P55288 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Cdh11P55288 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC11.85□□□□□ -0.51
Cdh11P55288 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Cdh11P55288 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms