Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Gm45643-201ENSMUST00000211364 1484 ntBASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Gm44799-201ENSMUST00000207639 1202 ntBASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Gm9816-201ENSMUST00000122292 1414 ntBASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Sh3rf1Q69ZI1 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Gm11557-201ENSMUST00000120200 1008 ntBASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Gm8927-201ENSMUST00000181978 981 ntBASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Gm3222-201ENSMUST00000071282 990 ntBASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Sh3rf1Q69ZI1 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Sh3rf1Q69ZI1 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Sh3rf1Q69ZI1 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Sh3rf1Q69ZI1 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Sh3rf1Q69ZI1 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Sh3rf1Q69ZI1 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Sh3rf1Q69ZI1 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Sh3rf1Q69ZI1 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC13.21□□□□□ -0.3
Sh3rf1Q69ZI1 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Sh3rf1Q69ZI1 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Sh3rf1Q69ZI1 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Sh3rf1Q69ZI1 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Sh3rf1Q69ZI1 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Sh3rf1Q69ZI1 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Gm18905-201ENSMUST00000205454 928 ntBASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Sh3rf1Q69ZI1 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 100.1 ms