Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
Sox3P53784 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC12.5□□□□□ -0.41
Sox3P53784 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
Sox3P53784 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
Sox3P53784 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC12.5□□□□□ -0.41
Sox3P53784 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC12.5□□□□□ -0.41
Sox3P53784 Gm29396-201ENSMUST00000185659 716 ntBASIC12.5□□□□□ -0.41
Sox3P53784 Gm5069-202ENSMUST00000192714 1011 ntBASIC12.5□□□□□ -0.41
Sox3P53784 Gm5850-201ENSMUST00000192923 1206 ntBASIC12.5□□□□□ -0.41
Sox3P53784 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC12.5□□□□□ -0.41
Sox3P53784 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Gm3222-201ENSMUST00000071282 990 ntBASIC12.5□□□□□ -0.41
Sox3P53784 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Sox3P53784 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Sox3P53784 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Sox3P53784 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC12.5□□□□□ -0.41
Sox3P53784 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sox3P53784 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Sox3P53784 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC12.49□□□□□ -0.41
Sox3P53784 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Ssr1-203ENSMUST00000225246 1825 ntBASIC12.49□□□□□ -0.41
Sox3P53784 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Sox3P53784 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC12.49□□□□□ -0.41
Sox3P53784 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Gm12485-201ENSMUST00000119641 291 ntBASIC12.49□□□□□ -0.41
Sox3P53784 Gm13461-201ENSMUST00000120980 662 ntBASIC12.49□□□□□ -0.41
Sox3P53784 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC12.49□□□□□ -0.41
Sox3P53784 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Gm16505-201ENSMUST00000179981 232 ntBASIC12.49□□□□□ -0.41
Sox3P53784 Gm27772-201ENSMUST00000184900 187 ntBASIC12.49□□□□□ -0.41
Sox3P53784 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
Sox3P53784 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC12.49□□□□□ -0.41
Sox3P53784 AC139350.3-201ENSMUST00000226151 420 ntBASIC12.49□□□□□ -0.41
Sox3P53784 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Sox3P53784 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 AC164107.1-201ENSMUST00000227730 2161 ntBASIC12.49□□□□□ -0.41
Sox3P53784 Gm45242-201ENSMUST00000210666 2129 ntBASIC12.49□□□□□ -0.41
Sox3P53784 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Sox3P53784 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Sox3P53784 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox3P53784 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC12.48□□□□□ -0.41
Sox3P53784 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sox3P53784 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox3P53784 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox3P53784 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox3P53784 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Sox3P53784 Gm42829-201ENSMUST00000198417 2585 ntBASIC12.48□□□□□ -0.41
Sox3P53784 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox3P53784 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC12.48□□□□□ -0.41
Sox3P53784 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sox3P53784 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox3P53784 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Sox3P53784 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox3P53784 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox3P53784 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Sox3P53784 Gm13385-201ENSMUST00000121089 220 ntBASIC12.48□□□□□ -0.41
Sox3P53784 Gm13786-201ENSMUST00000122371 333 ntBASIC12.48□□□□□ -0.41
Sox3P53784 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox3P53784 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC12.48□□□□□ -0.41
Sox3P53784 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC12.48□□□□□ -0.41
Sox3P53784 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC12.48□□□□□ -0.41
Sox3P53784 Gm6152-201ENSMUST00000151704 340 ntBASIC12.48□□□□□ -0.41
Sox3P53784 Gm17376-201ENSMUST00000166016 84 ntBASIC12.48□□□□□ -0.41
Sox3P53784 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sox3P53784 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms