Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC12.58□□□□□ -0.4
Tnfsf4P43488 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Gm15222-202ENSMUST00000228667 1726 ntBASIC12.58□□□□□ -0.4
Tnfsf4P43488 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC12.58□□□□□ -0.4
Tnfsf4P43488 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Tnfsf4P43488 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC12.57□□□□□ -0.4
Tnfsf4P43488 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Gm7730-201ENSMUST00000212486 454 ntBASIC12.57□□□□□ -0.4
Tnfsf4P43488 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC12.57□□□□□ -0.4
Tnfsf4P43488 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Syt7-204ENSMUST00000223586 1344 ntBASIC12.57□□□□□ -0.4
Tnfsf4P43488 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Tnfsf4P43488 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC12.56□□□□□ -0.4
Tnfsf4P43488 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC12.56□□□□□ -0.4
Tnfsf4P43488 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Gm20554-201ENSMUST00000177421 2352 ntBASIC12.56□□□□□ -0.4
Tnfsf4P43488 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Tnfsf4P43488 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms