Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Chd3B1AR17 Gm3287-205ENSMUST00000228893 1332 ntBASIC12.75□□□□□ -0.37
Chd3B1AR17 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Chd3B1AR17 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC12.75□□□□□ -0.37
Chd3B1AR17 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Chd3B1AR17 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Chd3B1AR17 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Gm30285-201ENSMUST00000214614 422 ntBASIC12.74□□□□□ -0.37
Chd3B1AR17 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC12.74□□□□□ -0.37
Chd3B1AR17 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC12.74□□□□□ -0.37
Chd3B1AR17 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Chd3B1AR17 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Chd3B1AR17 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Daam2-202ENSMUST00000224595 1926 ntBASIC12.74□□□□□ -0.37
Chd3B1AR17 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC12.74□□□□□ -0.37
Chd3B1AR17 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Chd3B1AR17 Gm11222-201ENSMUST00000119005 738 ntBASIC12.74□□□□□ -0.37
Chd3B1AR17 Gm13342-201ENSMUST00000121055 207 ntBASIC12.74□□□□□ -0.37
Chd3B1AR17 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Gm18584-201ENSMUST00000203098 964 ntBASIC12.74□□□□□ -0.37
Chd3B1AR17 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC12.74□□□□□ -0.37
Chd3B1AR17 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Chd3B1AR17 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Chd3B1AR17 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Chd3B1AR17 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Chd3B1AR17 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC12.73□□□□□ -0.37
Chd3B1AR17 Ighv8-10-201ENSMUST00000199579 358 ntBASIC12.73□□□□□ -0.37
Chd3B1AR17 Gm7783-201ENSMUST00000204795 781 ntBASIC12.73□□□□□ -0.37
Chd3B1AR17 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
Chd3B1AR17 AC159747.1-201ENSMUST00000219903 265 ntBASIC12.73□□□□□ -0.37
Chd3B1AR17 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
Chd3B1AR17 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
Chd3B1AR17 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Chd3B1AR17 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC12.73□□□□□ -0.37
Chd3B1AR17 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Gm11964-201ENSMUST00000120982 444 ntBASIC12.73□□□□□ -0.37
Chd3B1AR17 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC12.73□□□□□ -0.37
Chd3B1AR17 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Chd3B1AR17 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Chd3B1AR17 Gm43570-201ENSMUST00000199951 3688 ntBASIC12.72□□□□□ -0.37
Chd3B1AR17 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Chd3B1AR17 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
Chd3B1AR17 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Chd3B1AR17 Gm9025-201ENSMUST00000122415 1575 ntBASIC12.72□□□□□ -0.37
Chd3B1AR17 AC113060.1-201ENSMUST00000225689 1573 ntBASIC12.72□□□□□ -0.37
Chd3B1AR17 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Chd3B1AR17 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Chd3B1AR17 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Chd3B1AR17 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Chd3B1AR17 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC12.72□□□□□ -0.37
Chd3B1AR17 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Chd3B1AR17 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Chd3B1AR17 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Chd3B1AR17 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Chd3B1AR17 Mir874-201ENSMUST00000104769 76 ntBASIC12.72□□□□□ -0.37
Chd3B1AR17 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC12.72□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 72.5 ms