Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Scn11aQ9R053 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Scn11aQ9R053 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Scn11aQ9R053 Gm19459-201ENSMUST00000176240 835 ntBASIC15.21■□□□□ 0.02
Scn11aQ9R053 Gm9540-201ENSMUST00000188230 478 ntBASIC15.21■□□□□ 0.02
Scn11aQ9R053 Gm9555-201ENSMUST00000200908 583 ntBASIC15.21■□□□□ 0.02
Scn11aQ9R053 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
Scn11aQ9R053 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
Scn11aQ9R053 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Scn11aQ9R053 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Scn11aQ9R053 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Scn11aQ9R053 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Scn11aQ9R053 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Scn11aQ9R053 AC151895.1-201ENSMUST00000219025 1742 ntBASIC15.21■□□□□ 0.02
Scn11aQ9R053 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Scn11aQ9R053 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Scn11aQ9R053 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Gm42840-201ENSMUST00000200303 2251 ntBASIC15.2■□□□□ 0.02
Scn11aQ9R053 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC15.2■□□□□ 0.02
Scn11aQ9R053 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Scn11aQ9R053 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Scn11aQ9R053 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 AC154305.4-201ENSMUST00000224520 614 ntBASIC15.19■□□□□ 0.02
Scn11aQ9R053 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC15.19■□□□□ 0.02
Scn11aQ9R053 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Gm43908-201ENSMUST00000205074 1472 ntBASIC15.19■□□□□ 0.02
Scn11aQ9R053 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Scn11aQ9R053 Gm14665-201ENSMUST00000122294 557 ntBASIC15.19■□□□□ 0.02
Scn11aQ9R053 Gm10752-201ENSMUST00000218348 729 ntBASIC15.19■□□□□ 0.02
Scn11aQ9R053 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Gm11930-201ENSMUST00000117788 190 ntBASIC15.18■□□□□ 0.02
Scn11aQ9R053 Gm12380-201ENSMUST00000119012 544 ntBASIC15.18■□□□□ 0.02
Scn11aQ9R053 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Gm18041-201ENSMUST00000218210 618 ntBASIC15.18■□□□□ 0.02
Scn11aQ9R053 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 62.5 ms