Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 AC155258.1-201ENSMUST00000219303 253 ntBASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 AC166997.1-201ENSMUST00000225122 572 ntBASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 AC131997.1-201ENSMUST00000228611 1229 ntBASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Sh3rf1Q69ZI1 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Gm5303-201ENSMUST00000117943 1252 ntBASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Sh3rf1Q69ZI1 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Gm27839-201ENSMUST00000184242 106 ntBASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Sh3rf1Q69ZI1 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms