Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim28Q62318 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Trim28Q62318 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim28Q62318 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim28Q62318 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim28Q62318 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim28Q62318 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim28Q62318 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim28Q62318 AC151895.1-201ENSMUST00000219025 1742 ntBASIC16.82■□□□□ 0.28
Trim28Q62318 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim28Q62318 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim28Q62318 Gm2673-201ENSMUST00000120958 1608 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim28Q62318 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Gm24830-201ENSMUST00000102024 166 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Trim28Q62318 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Gm11930-201ENSMUST00000117788 190 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Gm13315-201ENSMUST00000120376 991 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Gm25890-201ENSMUST00000177643 165 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Rnu1b2-201ENSMUST00000178073 165 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Rnu1b1-201ENSMUST00000178250 165 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Gm22614-201ENSMUST00000178300 165 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC16.81■□□□□ 0.28
Trim28Q62318 AC093022.1-201ENSMUST00000226949 1072 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Gm22042-201ENSMUST00000082989 165 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Gm26232-201ENSMUST00000083360 166 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Gm24136-201ENSMUST00000083374 165 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Rnu1b6-201ENSMUST00000083839 166 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Gm26110-201ENSMUST00000083971 165 ntBASIC16.81■□□□□ 0.28
Trim28Q62318 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
Trim28Q62318 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim28Q62318 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim28Q62318 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Trim28Q62318 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Gm45638-201ENSMUST00000211507 2878 ntBASIC16.8■□□□□ 0.28
Trim28Q62318 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC16.8■□□□□ 0.28
Trim28Q62318 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Trim28Q62318 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Trim28Q62318 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Trim28Q62318 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Trim28Q62318 Gm11597-201ENSMUST00000121423 964 ntBASIC16.8■□□□□ 0.28
Trim28Q62318 Gm5863-201ENSMUST00000121760 1008 ntBASIC16.8■□□□□ 0.28
Trim28Q62318 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC16.8■□□□□ 0.28
Trim28Q62318 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC16.8■□□□□ 0.28
Trim28Q62318 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Trim28Q62318 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 AA914427-201ENSMUST00000193194 1166 ntBASIC16.8■□□□□ 0.28
Trim28Q62318 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Gm38317-201ENSMUST00000195564 343 ntBASIC16.8■□□□□ 0.28
Trim28Q62318 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC16.8■□□□□ 0.28
Trim28Q62318 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC16.8■□□□□ 0.28
Trim28Q62318 CT485787.1-201ENSMUST00000225617 968 ntBASIC16.8■□□□□ 0.28
Trim28Q62318 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Trim28Q62318 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC16.8■□□□□ 0.28
Trim28Q62318 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Trim28Q62318 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC16.8■□□□□ 0.28
Trim28Q62318 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim28Q62318 Gm6198-201ENSMUST00000191337 2929 ntBASIC16.8■□□□□ 0.28
Trim28Q62318 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC16.79■□□□□ 0.28
Trim28Q62318 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms