Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Six4Q61321 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Six4Q61321 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
Six4Q61321 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Six4Q61321 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC13.15□□□□□ -0.3
Six4Q61321 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC13.15□□□□□ -0.3
Six4Q61321 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC13.15□□□□□ -0.3
Six4Q61321 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC13.15□□□□□ -0.3
Six4Q61321 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
Six4Q61321 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Six4Q61321 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Six4Q61321 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Gm13226-201ENSMUST00000117838 404 ntBASIC13.15□□□□□ -0.3
Six4Q61321 Gm11637-201ENSMUST00000120601 592 ntBASIC13.15□□□□□ -0.3
Six4Q61321 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC13.15□□□□□ -0.3
Six4Q61321 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
Six4Q61321 Gm43433-201ENSMUST00000196573 481 ntBASIC13.15□□□□□ -0.3
Six4Q61321 Gm40466-201ENSMUST00000212174 422 ntBASIC13.15□□□□□ -0.3
Six4Q61321 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Six4Q61321 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Gm7002-201ENSMUST00000221386 2165 ntBASIC13.15□□□□□ -0.3
Six4Q61321 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Six4Q61321 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Gm44094-201ENSMUST00000204703 2030 ntBASIC13.15□□□□□ -0.3
Six4Q61321 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Six4Q61321 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
Six4Q61321 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
Six4Q61321 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Six4Q61321 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
Six4Q61321 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Gm37844-201ENSMUST00000192473 4097 ntBASIC13.14□□□□□ -0.31
Six4Q61321 Ssr1-203ENSMUST00000225246 1825 ntBASIC13.14□□□□□ -0.31
Six4Q61321 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC13.14□□□□□ -0.31
Six4Q61321 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Six4Q61321 Snord83b-201ENSMUST00000104546 94 ntBASIC13.14□□□□□ -0.31
Six4Q61321 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Gm15824-201ENSMUST00000119516 955 ntBASIC13.14□□□□□ -0.31
Six4Q61321 Gm14704-201ENSMUST00000120300 874 ntBASIC13.14□□□□□ -0.31
Six4Q61321 Gm1335-201ENSMUST00000121653 386 ntBASIC13.14□□□□□ -0.31
Six4Q61321 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC13.14□□□□□ -0.31
Six4Q61321 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Gm26185-201ENSMUST00000157692 266 ntBASIC13.14□□□□□ -0.31
Six4Q61321 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Six4Q61321 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC13.14□□□□□ -0.31
Six4Q61321 Gm37042-201ENSMUST00000193816 581 ntBASIC13.14□□□□□ -0.31
Six4Q61321 Gm43818-201ENSMUST00000200605 466 ntBASIC13.14□□□□□ -0.31
Six4Q61321 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC13.14□□□□□ -0.31
Six4Q61321 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC13.14□□□□□ -0.31
Six4Q61321 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC13.14□□□□□ -0.31
Six4Q61321 Gm10339-203ENSMUST00000225409 1671 ntBASIC13.14□□□□□ -0.31
Six4Q61321 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC13.14□□□□□ -0.31
Six4Q61321 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC13.14□□□□□ -0.31
Six4Q61321 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Six4Q61321 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC13.13□□□□□ -0.31
Six4Q61321 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Six4Q61321 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Six4Q61321 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Six4Q61321 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Six4Q61321 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Six4Q61321 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC13.13□□□□□ -0.31
Six4Q61321 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 84.9 ms