Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Gm22331-201ENSMUST00000158066 136 ntBASIC14□□□□□ -0.17
Upf3bQ3ULL6 Gm37748-201ENSMUST00000194379 1140 ntBASIC14□□□□□ -0.17
Upf3bQ3ULL6 Gm7561-201ENSMUST00000211203 886 ntBASIC14□□□□□ -0.17
Upf3bQ3ULL6 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC14□□□□□ -0.17
Upf3bQ3ULL6 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC14□□□□□ -0.17
Upf3bQ3ULL6 AC155237.1-201ENSMUST00000226196 1279 ntBASIC14□□□□□ -0.17
Upf3bQ3ULL6 AC132467.2-202ENSMUST00000227726 559 ntBASIC14□□□□□ -0.17
Upf3bQ3ULL6 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Upf3bQ3ULL6 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Gm12203-201ENSMUST00000118235 598 ntBASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Gm12209-201ENSMUST00000120089 596 ntBASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Gm17150-201ENSMUST00000165577 381 ntBASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Gm29649-201ENSMUST00000185649 419 ntBASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Gm37922-201ENSMUST00000195596 455 ntBASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Gm6091-201ENSMUST00000098307 165 ntBASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Upf3bQ3ULL6 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Gm45684-201ENSMUST00000210244 1571 ntBASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Gm24644-201ENSMUST00000157114 139 ntBASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Gm6458-201ENSMUST00000211573 635 ntBASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3bQ3ULL6 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC13.98□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 57.3 ms