Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Sox9Q04887 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Sox9Q04887 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Sox9Q04887 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sox9Q04887 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
Sox9Q04887 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sox9Q04887 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sox9Q04887 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Sox9Q04887 Ntrk2-208ENSMUST00000225583 2719 ntBASIC13.47□□□□□ -0.25
Sox9Q04887 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Sox9Q04887 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Sox9Q04887 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC13.47□□□□□ -0.25
Sox9Q04887 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Sox9Q04887 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC13.47□□□□□ -0.25
Sox9Q04887 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sox9Q04887 Gm5732-201ENSMUST00000182596 1007 ntBASIC13.47□□□□□ -0.25
Sox9Q04887 Gm9540-201ENSMUST00000188230 478 ntBASIC13.47□□□□□ -0.25
Sox9Q04887 Gm38197-201ENSMUST00000192320 2122 ntBASIC13.47□□□□□ -0.25
Sox9Q04887 Gm7003-201ENSMUST00000195089 312 ntBASIC13.47□□□□□ -0.25
Sox9Q04887 AC107638.1-201ENSMUST00000213690 1061 ntBASIC13.47□□□□□ -0.25
Sox9Q04887 Ntng1-201ENSMUST00000051253 327 ntBASIC13.47□□□□□ -0.25
Sox9Q04887 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sox9Q04887 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sox9Q04887 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Sox9Q04887 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC13.47□□□□□ -0.25
Sox9Q04887 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Sox9Q04887 Ntrk2-209ENSMUST00000225950 2640 ntBASIC13.47□□□□□ -0.25
Sox9Q04887 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sox9Q04887 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sox9Q04887 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sox9Q04887 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Sox9Q04887 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC13.47□□□□□ -0.25
Sox9Q04887 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC13.47□□□□□ -0.25
Sox9Q04887 Gm38157-201ENSMUST00000194178 1698 ntBASIC13.47□□□□□ -0.25
Sox9Q04887 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sox9Q04887 AC167013.2-201ENSMUST00000228520 2684 ntBASIC13.47□□□□□ -0.25
Sox9Q04887 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Sox9Q04887 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC13.46□□□□□ -0.25
Sox9Q04887 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Sox9Q04887 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Gm13888-201ENSMUST00000119148 422 ntBASIC13.46□□□□□ -0.25
Sox9Q04887 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Gm25043-201ENSMUST00000158604 212 ntBASIC13.46□□□□□ -0.25
Sox9Q04887 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC13.46□□□□□ -0.25
Sox9Q04887 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Sox9Q04887 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC13.46□□□□□ -0.25
Sox9Q04887 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 CT030684.3-201ENSMUST00000227308 2445 ntBASIC13.46□□□□□ -0.25
Sox9Q04887 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
Sox9Q04887 Gm8228-201ENSMUST00000189949 2192 ntBASIC13.46□□□□□ -0.25
Sox9Q04887 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Sox9Q04887 Gm44999-201ENSMUST00000207456 1493 ntBASIC13.46□□□□□ -0.25
Sox9Q04887 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Sox9Q04887 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Sox9Q04887 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Sox9Q04887 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Sox9Q04887 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Sox9Q04887 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Sox9Q04887 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Sox9Q04887 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
Sox9Q04887 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC13.45□□□□□ -0.26
Sox9Q04887 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Sox9Q04887 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 Gm45779-201ENSMUST00000212189 4064 ntBASIC13.45□□□□□ -0.26
Sox9Q04887 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC13.45□□□□□ -0.26
Sox9Q04887 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC13.45□□□□□ -0.26
Sox9Q04887 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC13.45□□□□□ -0.26
Sox9Q04887 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Sox9Q04887 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
Sox9Q04887 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Sox9Q04887 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC13.45□□□□□ -0.26
Sox9Q04887 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms