Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm21470-201ENSMUST00000187680 696 ntBASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Gm16476-201ENSMUST00000221544 139 ntBASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Col28a1Q2UY11 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Gm12138-201ENSMUST00000122180 951 ntBASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Gm8515-201ENSMUST00000194852 576 ntBASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Gm43703-201ENSMUST00000200523 763 ntBASIC12.74□□□□□ -0.37
Col28a1Q2UY11 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Gm20445-201ENSMUST00000061905 565 ntBASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Gm25857-201ENSMUST00000082788 129 ntBASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Gm42863-201ENSMUST00000197875 2958 ntBASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Pck2-205ENSMUST00000226352 2784 ntBASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col28a1Q2UY11 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Gm13859-201ENSMUST00000119936 1423 ntBASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Gm42612-201ENSMUST00000197986 623 ntBASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Gm43170-201ENSMUST00000199827 612 ntBASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Gm45195-201ENSMUST00000205597 1008 ntBASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Gm45384-201ENSMUST00000210451 277 ntBASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col28a1Q2UY11 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC12.72□□□□□ -0.37
Col28a1Q2UY11 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms