Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC12.97□□□□□ -0.33
Col9a1Q05722 Mapk1ip1-201ENSMUST00000075667 1502 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col9a1Q05722 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Col9a1Q05722 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
Col9a1Q05722 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Col9a1Q05722 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC12.97□□□□□ -0.33
Col9a1Q05722 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col9a1Q05722 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col9a1Q05722 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col9a1Q05722 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col9a1Q05722 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col9a1Q05722 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC12.96□□□□□ -0.33
Col9a1Q05722 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 AC160966.1-202ENSMUST00000216860 1318 ntTSL 5 BASIC12.96□□□□□ -0.33
Col9a1Q05722 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC12.96□□□□□ -0.33
Col9a1Q05722 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Col9a1Q05722 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 AC154186.1-201ENSMUST00000227711 1597 ntBASIC12.96□□□□□ -0.33
Col9a1Q05722 Gcg-201ENSMUST00000102733 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Gm6506-201ENSMUST00000119775 1136 ntBASIC12.96□□□□□ -0.33
Col9a1Q05722 Gm14219-201ENSMUST00000120414 288 ntBASIC12.96□□□□□ -0.33
Col9a1Q05722 Gm6027-201ENSMUST00000121467 756 ntBASIC12.96□□□□□ -0.33
Col9a1Q05722 Gm15976-201ENSMUST00000129701 429 ntTSL 3 BASIC12.96□□□□□ -0.33
Col9a1Q05722 4930551O13Rik-201ENSMUST00000145585 1065 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Mir133a-1hg-201ENSMUST00000179771 395 ntTSL 3 BASIC12.96□□□□□ -0.33
Col9a1Q05722 Gm9499-201ENSMUST00000180888 964 ntBASIC12.96□□□□□ -0.33
Col9a1Q05722 Gm3809-201ENSMUST00000180973 1006 ntBASIC12.96□□□□□ -0.33
Col9a1Q05722 Gm9916-201ENSMUST00000192943 1228 ntBASIC12.96□□□□□ -0.33
Col9a1Q05722 1700047N06Rik-201ENSMUST00000194474 920 ntBASIC12.96□□□□□ -0.33
Col9a1Q05722 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC12.96□□□□□ -0.33
Col9a1Q05722 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 4933430L12Rik-201ENSMUST00000206788 1194 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Olfr1468-ps1-201ENSMUST00000207287 1208 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Col9a1Q05722 Sult3a1-202ENSMUST00000218204 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Mirlet7i-201ENSMUST00000083472 85 ntBASIC12.96□□□□□ -0.33
Col9a1Q05722 Sult3a1-201ENSMUST00000092597 1047 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Col9a1Q05722 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Col9a1Q05722 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col9a1Q05722 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Col9a1Q05722 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col9a1Q05722 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col9a1Q05722 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
Col9a1Q05722 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Col9a1Q05722 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Col9a1Q05722 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col9a1Q05722 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col9a1Q05722 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC12.96□□□□□ -0.34
Col9a1Q05722 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC12.96□□□□□ -0.34
Col9a1Q05722 Hormad1-204ENSMUST00000171191 1437 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col9a1Q05722 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col9a1Q05722 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Col9a1Q05722 Gm10040-201ENSMUST00000080726 1662 ntBASIC12.96□□□□□ -0.34
Col9a1Q05722 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC12.96□□□□□ -0.34
Col9a1Q05722 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col9a1Q05722 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Gm6170-201ENSMUST00000187672 1388 ntBASIC12.95□□□□□ -0.34
Col9a1Q05722 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Col9a1Q05722 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC12.95□□□□□ -0.34
Col9a1Q05722 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Gm14058-201ENSMUST00000116082 735 ntBASIC12.95□□□□□ -0.34
Col9a1Q05722 Gm12516-201ENSMUST00000120819 385 ntBASIC12.95□□□□□ -0.34
Col9a1Q05722 Gm4879-201ENSMUST00000122190 1272 ntBASIC12.95□□□□□ -0.34
Col9a1Q05722 Gm13182-201ENSMUST00000122241 312 ntBASIC12.95□□□□□ -0.34
Col9a1Q05722 Gm14905-201ENSMUST00000122351 639 ntBASIC12.95□□□□□ -0.34
Col9a1Q05722 Gm13008-201ENSMUST00000142289 507 ntTSL 5 BASIC12.95□□□□□ -0.34
Col9a1Q05722 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC12.95□□□□□ -0.34
Col9a1Q05722 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col9a1Q05722 Vmn1r-ps17-201ENSMUST00000175797 894 ntBASIC12.95□□□□□ -0.34
Col9a1Q05722 Gm26907-201ENSMUST00000181794 729 ntTSL 5 BASIC12.95□□□□□ -0.34
Col9a1Q05722 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms