Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Cdx1P18111 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
Cdx1P18111 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Cdx1P18111 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC10.61□□□□□ -0.71
Cdx1P18111 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC10.61□□□□□ -0.71
Cdx1P18111 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Cdx1P18111 Gm18766-201ENSMUST00000189811 808 ntBASIC10.61□□□□□ -0.71
Cdx1P18111 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
Cdx1P18111 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC10.61□□□□□ -0.71
Cdx1P18111 AC158529.1-201ENSMUST00000223618 239 ntBASIC10.61□□□□□ -0.71
Cdx1P18111 Rbfox2-208ENSMUST00000227930 1218 ntBASIC10.61□□□□□ -0.71
Cdx1P18111 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Cdx1P18111 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Cdx1P18111 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Cdx1P18111 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC10.61□□□□□ -0.71
Cdx1P18111 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Cdx1P18111 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Gm45643-201ENSMUST00000211364 1484 ntBASIC10.61□□□□□ -0.71
Cdx1P18111 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
Cdx1P18111 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Cdx1P18111 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC10.6□□□□□ -0.71
Cdx1P18111 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Gm45532-201ENSMUST00000210342 3620 ntBASIC10.6□□□□□ -0.71
Cdx1P18111 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
Cdx1P18111 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC10.6□□□□□ -0.71
Cdx1P18111 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC10.6□□□□□ -0.71
Cdx1P18111 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.71
Cdx1P18111 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Pex26-202ENSMUST00000118234 3778 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC10.6□□□□□ -0.71
Cdx1P18111 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC10.6□□□□□ -0.71
Cdx1P18111 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC10.6□□□□□ -0.71
Cdx1P18111 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC10.6□□□□□ -0.71
Cdx1P18111 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC10.6□□□□□ -0.71
Cdx1P18111 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC10.6□□□□□ -0.71
Cdx1P18111 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Gm15991-202ENSMUST00000212123 3565 ntBASIC10.6□□□□□ -0.71
Cdx1P18111 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC10.6□□□□□ -0.71
Cdx1P18111 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC10.6□□□□□ -0.71
Cdx1P18111 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC10.6□□□□□ -0.71
Cdx1P18111 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC10.6□□□□□ -0.71
Cdx1P18111 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Cdx1P18111 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC10.6□□□□□ -0.71
Cdx1P18111 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
Cdx1P18111 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC10.59□□□□□ -0.71
Cdx1P18111 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms