Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Gm16342-201ENSMUST00000124025 1025 ntBASIC14.73□□□□□ -0.05
Ushbp1Q8R370 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Gm38671-201ENSMUST00000200573 130 ntBASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Gm40466-201ENSMUST00000212174 422 ntBASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Gm5385-201ENSMUST00000118988 1559 ntBASIC14.73□□□□□ -0.05
Ushbp1Q8R370 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Gm42442-201ENSMUST00000197951 1133 ntBASIC14.72□□□□□ -0.05
Ushbp1Q8R370 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 AC134335.2-201ENSMUST00000227660 440 ntBASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Rn7sk-201ENSMUST00000083103 331 ntBASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Gm26315-201ENSMUST00000083890 321 ntBASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ushbp1Q8R370 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Gm7002-201ENSMUST00000221386 2165 ntBASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 AC126253.1-201ENSMUST00000227974 824 ntBASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ushbp1Q8R370 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
Ushbp1Q8R370 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Ushbp1Q8R370 Gm9755-201ENSMUST00000032981 1356 ntBASIC14.71□□□□□ -0.06
Ushbp1Q8R370 Dctn4-202ENSMUST00000223590 1530 ntBASIC14.71□□□□□ -0.06
Ushbp1Q8R370 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Ushbp1Q8R370 Ssr1-203ENSMUST00000225246 1825 ntBASIC14.71□□□□□ -0.06
Ushbp1Q8R370 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Ushbp1Q8R370 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.06
Ushbp1Q8R370 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
Ushbp1Q8R370 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Ushbp1Q8R370 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Gm13050-201ENSMUST00000122149 1345 ntBASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms