Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC15.47■□□□□ 0.07
Trim56Q80VI1 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Gm6222-202ENSMUST00000182143 629 ntBASIC15.46■□□□□ 0.07
Trim56Q80VI1 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Gm37042-201ENSMUST00000193816 581 ntBASIC15.46■□□□□ 0.07
Trim56Q80VI1 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Gm19163-201ENSMUST00000223313 780 ntBASIC15.46■□□□□ 0.07
Trim56Q80VI1 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC15.46■□□□□ 0.07
Trim56Q80VI1 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
Trim56Q80VI1 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
Trim56Q80VI1 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Trim56Q80VI1 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Gm38157-201ENSMUST00000194178 1698 ntBASIC15.45■□□□□ 0.06
Trim56Q80VI1 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Gm22018-201ENSMUST00000104357 131 ntBASIC15.45■□□□□ 0.06
Trim56Q80VI1 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Gm5187-201ENSMUST00000117317 991 ntBASIC15.45■□□□□ 0.06
Trim56Q80VI1 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Gm8062-201ENSMUST00000139696 444 ntBASIC15.45■□□□□ 0.06
Trim56Q80VI1 Gm25261-201ENSMUST00000157416 134 ntBASIC15.45■□□□□ 0.06
Trim56Q80VI1 Gm26185-201ENSMUST00000157692 266 ntBASIC15.45■□□□□ 0.06
Trim56Q80VI1 Gm9061-201ENSMUST00000182707 1006 ntBASIC15.45■□□□□ 0.06
Trim56Q80VI1 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC15.45■□□□□ 0.06
Trim56Q80VI1 Gm32025-201ENSMUST00000217960 307 ntBASIC15.45■□□□□ 0.06
Trim56Q80VI1 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Snora73a-201ENSMUST00000082453 205 ntBASIC15.45■□□□□ 0.06
Trim56Q80VI1 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim56Q80VI1 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Gm17208-201ENSMUST00000168388 535 ntBASIC15.44■□□□□ 0.06
Trim56Q80VI1 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Gm9728-201ENSMUST00000200197 1055 ntBASIC15.44■□□□□ 0.06
Trim56Q80VI1 AC022775.2-201ENSMUST00000227885 646 ntBASIC15.44■□□□□ 0.06
Trim56Q80VI1 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim56Q80VI1 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim56Q80VI1 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms