Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Tpm1P58771 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Tpm1P58771 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Tpm1P58771 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
Tpm1P58771 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Tpm1P58771 Gm6415-201ENSMUST00000118488 348 ntBASIC14.64□□□□□ -0.07
Tpm1P58771 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC14.64□□□□□ -0.07
Tpm1P58771 Gm28630-201ENSMUST00000187806 498 ntBASIC14.64□□□□□ -0.07
Tpm1P58771 Gm7774-201ENSMUST00000200064 533 ntBASIC14.64□□□□□ -0.07
Tpm1P58771 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC14.64□□□□□ -0.07
Tpm1P58771 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Tpm1P58771 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Tpm1P58771 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Tpm1P58771 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC14.64□□□□□ -0.07
Tpm1P58771 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Gm43273-201ENSMUST00000199649 2594 ntBASIC14.64□□□□□ -0.07
Tpm1P58771 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Tpm1P58771 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Tpm1P58771 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Tpm1P58771 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC14.64□□□□□ -0.07
Tpm1P58771 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC14.63□□□□□ -0.07
Tpm1P58771 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Gm5989-201ENSMUST00000096092 2077 ntBASIC14.63□□□□□ -0.07
Tpm1P58771 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Gm7820-201ENSMUST00000121012 1052 ntBASIC14.63□□□□□ -0.07
Tpm1P58771 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Mir7221-201ENSMUST00000184009 72 ntBASIC14.63□□□□□ -0.07
Tpm1P58771 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Gm5779-201ENSMUST00000218467 910 ntBASIC14.63□□□□□ -0.07
Tpm1P58771 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC14.63□□□□□ -0.07
Tpm1P58771 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Tpm1P58771 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Tpm1P58771 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Tpm1P58771 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Tpm1P58771 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC14.62□□□□□ -0.07
Tpm1P58771 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Gm27772-201ENSMUST00000184900 187 ntBASIC14.62□□□□□ -0.07
Tpm1P58771 Gm45841-201ENSMUST00000207700 164 ntBASIC14.62□□□□□ -0.07
Tpm1P58771 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC14.62□□□□□ -0.07
Tpm1P58771 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Tpm1P58771 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms