Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col9a1Q05722 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col9a1Q05722 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col9a1Q05722 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC13.01□□□□□ -0.33
Col9a1Q05722 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col9a1Q05722 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col9a1Q05722 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC13.01□□□□□ -0.33
Col9a1Q05722 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Col9a1Q05722 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col9a1Q05722 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col9a1Q05722 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
Col9a1Q05722 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col9a1Q05722 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col9a1Q05722 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col9a1Q05722 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Tspan8-203ENSMUST00000179196 1381 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Glrb-206ENSMUST00000194085 1341 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Mir698-201ENSMUST00000102164 109 ntBASIC13□□□□□ -0.33
Col9a1Q05722 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Col9a1Q05722 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC13□□□□□ -0.33
Col9a1Q05722 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC13□□□□□ -0.33
Col9a1Q05722 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC13□□□□□ -0.33
Col9a1Q05722 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC13□□□□□ -0.33
Col9a1Q05722 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Col9a1Q05722 Vmn1r-ps28-201ENSMUST00000174767 942 ntBASIC13□□□□□ -0.33
Col9a1Q05722 Gm26763-201ENSMUST00000180968 1093 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 1700031M16Rik-205ENSMUST00000189907 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Gm29741-201ENSMUST00000192667 421 ntBASIC13□□□□□ -0.33
Col9a1Q05722 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC13□□□□□ -0.33
Col9a1Q05722 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC13□□□□□ -0.33
Col9a1Q05722 Zfp799-202ENSMUST00000201499 651 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Gm45398-201ENSMUST00000210561 165 ntBASIC13□□□□□ -0.33
Col9a1Q05722 AC113082.2-201ENSMUST00000215876 756 ntTSL 3 BASIC13□□□□□ -0.33
Col9a1Q05722 Gm5369-201ENSMUST00000217499 588 ntBASIC13□□□□□ -0.33
Col9a1Q05722 Gm9004-201ENSMUST00000218739 1222 ntBASIC13□□□□□ -0.33
Col9a1Q05722 CT030704.2-201ENSMUST00000228887 494 ntBASIC13□□□□□ -0.33
Col9a1Q05722 Prss55-201ENSMUST00000089338 1032 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
Col9a1Q05722 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC13□□□□□ -0.33
Col9a1Q05722 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col9a1Q05722 AC121801.1-201ENSMUST00000225363 1899 ntBASIC12.99□□□□□ -0.33
Col9a1Q05722 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC12.99□□□□□ -0.33
Col9a1Q05722 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC12.99□□□□□ -0.33
Col9a1Q05722 Ifi44l-201ENSMUST00000046739 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Gm10710-201ENSMUST00000047876 3971 ntBASIC12.99□□□□□ -0.33
Col9a1Q05722 Tnnt3-214ENSMUST00000105953 1049 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Gm14274-201ENSMUST00000117182 615 ntBASIC12.99□□□□□ -0.33
Col9a1Q05722 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC12.99□□□□□ -0.33
Col9a1Q05722 Gm7247-201ENSMUST00000162998 1157 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Col9a1Q05722 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Ighv5-7-201ENSMUST00000192302 244 ntBASIC12.99□□□□□ -0.33
Col9a1Q05722 Gm42433-201ENSMUST00000196806 940 ntBASIC12.99□□□□□ -0.33
Col9a1Q05722 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Gm45481-201ENSMUST00000209717 877 ntBASIC12.99□□□□□ -0.33
Col9a1Q05722 Gm9132-201ENSMUST00000210182 832 ntBASIC12.99□□□□□ -0.33
Col9a1Q05722 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Ranbp1-201ENSMUST00000052325 923 ntTSL 3 BASIC12.99□□□□□ -0.33
Col9a1Q05722 Ifnb1-201ENSMUST00000055671 750 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Col9a1Q05722 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Col9a1Q05722 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Col9a1Q05722 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col9a1Q05722 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms