Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Gm8652-201ENSMUST00000181363 964 ntBASIC12.25□□□□□ -0.45
Cdc40Q9DC48 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Gm38223-201ENSMUST00000194484 695 ntBASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Gm7287-201ENSMUST00000205267 602 ntBASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Gm45841-201ENSMUST00000207700 164 ntBASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 AC110817.1-201ENSMUST00000225706 605 ntBASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Gm5161-201ENSMUST00000075243 853 ntBASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Gm24447-201ENSMUST00000083977 338 ntBASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 AC139054.1-201ENSMUST00000226898 1598 ntBASIC12.25□□□□□ -0.45
Cdc40Q9DC48 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Gm12957-201ENSMUST00000117835 377 ntBASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Gm13886-201ENSMUST00000117876 1183 ntBASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Mup-ps23-201ENSMUST00000118063 630 ntBASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Gm11814-201ENSMUST00000119515 929 ntBASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Gm13730-201ENSMUST00000121036 1462 ntBASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Gm43630-201ENSMUST00000201550 776 ntBASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Gm42550-201ENSMUST00000201553 960 ntBASIC12.24□□□□□ -0.45
Cdc40Q9DC48 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Zscan30-202ENSMUST00000224144 1458 ntBASIC12.24□□□□□ -0.45
Cdc40Q9DC48 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Gm38094-201ENSMUST00000195864 2978 ntBASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Cdc40Q9DC48 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Cdc40Q9DC48 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Cdc40Q9DC48 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms