Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 AC155298.2-201ENSMUST00000225485 6226 ntBASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Gm5466-201ENSMUST00000119395 1890 ntBASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Gm9124-201ENSMUST00000191789 1092 ntBASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Gm9113-201ENSMUST00000192510 1018 ntBASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Gm9131-201ENSMUST00000193557 1089 ntBASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Gm9121-201ENSMUST00000193749 1071 ntBASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Gm42929-201ENSMUST00000198374 1286 ntBASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Gm7067-201ENSMUST00000207698 1249 ntBASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Gm5035-201ENSMUST00000215581 927 ntBASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3bQ3ULL6 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Gm5989-201ENSMUST00000096092 2077 ntBASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3bQ3ULL6 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 AC122314.1-201ENSMUST00000223056 2239 ntBASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Mup-ps23-201ENSMUST00000118063 630 ntBASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Gm11814-201ENSMUST00000119515 929 ntBASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Gm8652-201ENSMUST00000181363 964 ntBASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Gm27486-201ENSMUST00000184923 80 ntBASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Gm44064-201ENSMUST00000204964 1087 ntBASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3bQ3ULL6 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms