Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 DOC2GP-204ENST00000639052 2548 ntBASIC15.6■□□□□ 0.09
COL28A1Q2UY09 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL28A1Q2UY09 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 BRWD1P1-201ENST00000401091 371 ntBASIC15.59■□□□□ 0.09
COL28A1Q2UY09 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 CROCCP4-201ENST00000457096 498 ntBASIC15.59■□□□□ 0.09
COL28A1Q2UY09 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 AL589739.1-201ENST00000607720 493 ntBASIC15.59■□□□□ 0.09
COL28A1Q2UY09 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL28A1Q2UY09 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
COL28A1Q2UY09 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
COL28A1Q2UY09 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.58■□□□□ 0.09
COL28A1Q2UY09 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.09
COL28A1Q2UY09 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 ANKRD19P-201ENST00000338192 862 ntBASIC15.58■□□□□ 0.08
COL28A1Q2UY09 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 RPL37AP1-201ENST00000412502 279 ntBASIC15.58■□□□□ 0.08
COL28A1Q2UY09 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 GOLGA2P4-201ENST00000441462 777 ntBASIC15.58■□□□□ 0.08
COL28A1Q2UY09 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 AL035456.1-201ENST00000456064 1369 ntBASIC15.58■□□□□ 0.08
COL28A1Q2UY09 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 AC092068.3-201ENST00000587894 2016 ntBASIC15.58■□□□□ 0.08
COL28A1Q2UY09 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms