Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox3P53784 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sox3P53784 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Sox3P53784 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sox3P53784 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sox3P53784 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sox3P53784 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC12.65□□□□□ -0.38
Sox3P53784 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sox3P53784 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Sox3P53784 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Sox3P53784 AC115735.4-201ENSMUST00000227460 1944 ntBASIC12.65□□□□□ -0.38
Sox3P53784 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sox3P53784 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
Sox3P53784 Gm15376-201ENSMUST00000122258 783 ntBASIC12.65□□□□□ -0.38
Sox3P53784 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Sox3P53784 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC12.65□□□□□ -0.38
Sox3P53784 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC12.65□□□□□ -0.38
Sox3P53784 Gm37259-201ENSMUST00000193903 849 ntBASIC12.65□□□□□ -0.38
Sox3P53784 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC12.65□□□□□ -0.38
Sox3P53784 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC12.65□□□□□ -0.38
Sox3P53784 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sox3P53784 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sox3P53784 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sox3P53784 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sox3P53784 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sox3P53784 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sox3P53784 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Sox3P53784 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Sox3P53784 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Sox3P53784 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC12.64□□□□□ -0.39
Sox3P53784 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC12.64□□□□□ -0.39
Sox3P53784 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Sox3P53784 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC12.64□□□□□ -0.39
Sox3P53784 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Sox3P53784 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Sox3P53784 Gm11803-201ENSMUST00000119966 444 ntBASIC12.64□□□□□ -0.39
Sox3P53784 Gm16342-201ENSMUST00000124025 1025 ntBASIC12.64□□□□□ -0.39
Sox3P53784 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC12.64□□□□□ -0.39
Sox3P53784 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC12.64□□□□□ -0.39
Sox3P53784 Gm26464-201ENSMUST00000157094 305 ntBASIC12.64□□□□□ -0.39
Sox3P53784 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC12.64□□□□□ -0.39
Sox3P53784 Gm42627-201ENSMUST00000197347 224 ntBASIC12.64□□□□□ -0.39
Sox3P53784 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC12.64□□□□□ -0.39
Sox3P53784 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC12.64□□□□□ -0.39
Sox3P53784 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Sox3P53784 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sox3P53784 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Sox3P53784 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Sox3P53784 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Sox3P53784 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
Sox3P53784 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Sox3P53784 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Sox3P53784 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC12.63□□□□□ -0.39
Sox3P53784 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC12.63□□□□□ -0.39
Sox3P53784 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sox3P53784 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC12.63□□□□□ -0.39
Sox3P53784 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC12.63□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms