Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Col18a1P39061 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Col18a1P39061 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC17■□□□□ 0.31
Col18a1P39061 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
Col18a1P39061 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Col18a1P39061 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC17■□□□□ 0.31
Col18a1P39061 Gm15725-201ENSMUST00000119947 1090 ntBASIC17■□□□□ 0.31
Col18a1P39061 Gm1848-201ENSMUST00000120711 789 ntBASIC17■□□□□ 0.31
Col18a1P39061 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Parvaos-201ENSMUST00000154848 1285 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
Col18a1P39061 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC17■□□□□ 0.31
Col18a1P39061 CT571245.2-201ENSMUST00000218421 305 ntBASIC17■□□□□ 0.31
Col18a1P39061 AC126799.1-201ENSMUST00000221976 246 ntBASIC17■□□□□ 0.31
Col18a1P39061 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC17■□□□□ 0.31
Col18a1P39061 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Gm9361-201ENSMUST00000198695 1507 ntBASIC17■□□□□ 0.31
Col18a1P39061 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Col18a1P39061 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC17■□□□□ 0.31
Col18a1P39061 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 AC159649.2-201ENSMUST00000222984 3223 ntBASIC17■□□□□ 0.31
Col18a1P39061 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Gm5847-201ENSMUST00000178959 1595 ntBASIC17■□□□□ 0.31
Col18a1P39061 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Gm26286-201ENSMUST00000104166 134 ntBASIC17■□□□□ 0.31
Col18a1P39061 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC17■□□□□ 0.31
Col18a1P39061 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Gm43692-201ENSMUST00000198236 1062 ntBASIC17■□□□□ 0.31
Col18a1P39061 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC17■□□□□ 0.31
Col18a1P39061 Gm44958-201ENSMUST00000203734 736 ntBASIC17■□□□□ 0.31
Col18a1P39061 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Col18a1P39061 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Col18a1P39061 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col18a1P39061 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC16.99■□□□□ 0.31
Col18a1P39061 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col18a1P39061 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col18a1P39061 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC16.99■□□□□ 0.31
Col18a1P39061 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC16.99■□□□□ 0.31
Col18a1P39061 Gm22711-201ENSMUST00000116890 133 ntBASIC16.99■□□□□ 0.31
Col18a1P39061 Gm12579-201ENSMUST00000118040 783 ntBASIC16.99■□□□□ 0.31
Col18a1P39061 Gm15352-201ENSMUST00000118696 270 ntBASIC16.99■□□□□ 0.31
Col18a1P39061 Gm11980-201ENSMUST00000121445 986 ntBASIC16.99■□□□□ 0.31
Col18a1P39061 Igf1-205ENSMUST00000121952 798 ntTSL 3 BASIC16.99■□□□□ 0.31
Col18a1P39061 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col18a1P39061 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col18a1P39061 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col18a1P39061 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col18a1P39061 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC16.98■□□□□ 0.31
Col18a1P39061 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Gm11956-201ENSMUST00000119525 512 ntBASIC16.98■□□□□ 0.31
Col18a1P39061 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC16.98■□□□□ 0.31
Col18a1P39061 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC16.98■□□□□ 0.31
Col18a1P39061 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Gm27910-201ENSMUST00000185004 107 ntBASIC16.98■□□□□ 0.31
Col18a1P39061 Gm5621-201ENSMUST00000187303 640 ntBASIC16.98■□□□□ 0.31
Col18a1P39061 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC16.98■□□□□ 0.31
Col18a1P39061 Bcap31-201ENSMUST00000002091 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC16.98■□□□□ 0.31
Col18a1P39061 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC16.98■□□□□ 0.31
Col18a1P39061 Arhgef33-207ENSMUST00000224966 490 ntBASIC16.98■□□□□ 0.31
Col18a1P39061 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Col18a1P39061 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC16.98■□□□□ 0.31
Col18a1P39061 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Col18a1P39061 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Col18a1P39061 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
Col18a1P39061 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Col18a1P39061 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Col18a1P39061 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
Col18a1P39061 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col18a1P39061 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms