Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC10.76□□□□□ -0.69
Sdc1P18828 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Sdc1P18828 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC10.76□□□□□ -0.69
Sdc1P18828 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Gm8798-201ENSMUST00000211877 1661 ntBASIC10.76□□□□□ -0.69
Sdc1P18828 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sdc1P18828 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Sdc1P18828 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC10.75□□□□□ -0.69
Sdc1P18828 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC10.75□□□□□ -0.69
Sdc1P18828 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Sdc1P18828 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC10.75□□□□□ -0.69
Sdc1P18828 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC10.75□□□□□ -0.69
Sdc1P18828 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC10.75□□□□□ -0.69
Sdc1P18828 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC10.75□□□□□ -0.69
Sdc1P18828 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm6659-201ENSMUST00000174752 547 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
Sdc1P18828 Gm29310-201ENSMUST00000185468 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21825-201ENSMUST00000185728 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm29109-201ENSMUST00000185895 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21896-201ENSMUST00000186520 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21873-201ENSMUST00000186728 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21794-201ENSMUST00000187056 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21880-201ENSMUST00000187275 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21826-201ENSMUST00000187451 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21198-201ENSMUST00000188393 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21749-201ENSMUST00000189343 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21901-201ENSMUST00000189568 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm29424-201ENSMUST00000189716 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm28599-201ENSMUST00000189838 694 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21867-201ENSMUST00000189917 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm29269-201ENSMUST00000190087 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21722-201ENSMUST00000190153 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm28423-201ENSMUST00000190701 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21899-201ENSMUST00000190745 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21910-201ENSMUST00000191163 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21849-201ENSMUST00000191571 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm28678-201ENSMUST00000191593 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm20910-201ENSMUST00000193268 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm21871-201ENSMUST00000194621 696 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Sdc1P18828 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
Sdc1P18828 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
Sdc1P18828 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC10.75□□□□□ -0.69
Sdc1P18828 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC10.75□□□□□ -0.69
Sdc1P18828 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Sdc1P18828 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC10.75□□□□□ -0.69
Sdc1P18828 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Gm18983-201ENSMUST00000222884 2729 ntBASIC10.75□□□□□ -0.69
Sdc1P18828 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Sdc1P18828 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sdc1P18828 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC10.75□□□□□ -0.69
Sdc1P18828 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC10.74□□□□□ -0.69
Sdc1P18828 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC10.74□□□□□ -0.69
Sdc1P18828 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
Sdc1P18828 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sdc1P18828 Gm9385-201ENSMUST00000117563 472 ntBASIC10.74□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms