Protein–RNA interactions for Protein: Q99ML9

Rnf111, E3 ubiquitin-protein ligase Arkadia, mousemouse

Predictions only

Length 989 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf111Q99ML9 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rnf111Q99ML9 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rnf111Q99ML9 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rnf111Q99ML9 Gm14523-201ENSMUST00000117260 558 ntBASIC20.6■□□□□ 0.89
Rnf111Q99ML9 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rnf111Q99ML9 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rnf111Q99ML9 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rnf111Q99ML9 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rnf111Q99ML9 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rnf111Q99ML9 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Rnf111Q99ML9 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Rnf111Q99ML9 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Rnf111Q99ML9 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Rnf111Q99ML9 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Rnf111Q99ML9 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Rnf111Q99ML9 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC20.58■□□□□ 0.89
Rnf111Q99ML9 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Rnf111Q99ML9 Gm7332-201ENSMUST00000118351 454 ntBASIC20.58■□□□□ 0.89
Rnf111Q99ML9 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
Rnf111Q99ML9 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Rnf111Q99ML9 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC20.58■□□□□ 0.88
Rnf111Q99ML9 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.57■□□□□ 0.88
Rnf111Q99ML9 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Rnf111Q99ML9 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.57■□□□□ 0.88
Rnf111Q99ML9 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.57■□□□□ 0.88
Rnf111Q99ML9 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.57■□□□□ 0.88
Rnf111Q99ML9 Gm12366-201ENSMUST00000121722 873 ntBASIC20.57■□□□□ 0.88
Rnf111Q99ML9 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rnf111Q99ML9 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.57■□□□□ 0.88
Rnf111Q99ML9 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rnf111Q99ML9 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.57■□□□□ 0.88
Rnf111Q99ML9 Gm5786-201ENSMUST00000085368 882 ntBASIC20.57■□□□□ 0.88
Rnf111Q99ML9 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rnf111Q99ML9 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf111Q99ML9 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
Rnf111Q99ML9 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf111Q99ML9 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
Rnf111Q99ML9 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf111Q99ML9 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf111Q99ML9 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf111Q99ML9 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.56■□□□□ 0.88
Rnf111Q99ML9 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC20.56■□□□□ 0.88
Rnf111Q99ML9 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
Rnf111Q99ML9 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf111Q99ML9 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf111Q99ML9 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf111Q99ML9 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf111Q99ML9 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf111Q99ML9 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf111Q99ML9 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf111Q99ML9 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf111Q99ML9 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf111Q99ML9 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf111Q99ML9 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf111Q99ML9 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf111Q99ML9 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC20.55■□□□□ 0.88
Rnf111Q99ML9 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf111Q99ML9 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.55■□□□□ 0.88
Rnf111Q99ML9 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf111Q99ML9 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rnf111Q99ML9 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Rnf111Q99ML9 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.54■□□□□ 0.88
Rnf111Q99ML9 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rnf111Q99ML9 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Rnf111Q99ML9 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rnf111Q99ML9 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.54■□□□□ 0.88
Rnf111Q99ML9 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rnf111Q99ML9 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rnf111Q99ML9 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Rnf111Q99ML9 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Rnf111Q99ML9 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Rnf111Q99ML9 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rnf111Q99ML9 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rnf111Q99ML9 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Rnf111Q99ML9 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rnf111Q99ML9 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Rnf111Q99ML9 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rnf111Q99ML9 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rnf111Q99ML9 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.52■□□□□ 0.88
Rnf111Q99ML9 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Rnf111Q99ML9 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.52■□□□□ 0.87
Rnf111Q99ML9 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rnf111Q99ML9 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.51■□□□□ 0.87
Rnf111Q99ML9 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rnf111Q99ML9 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.51■□□□□ 0.87
Rnf111Q99ML9 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.51■□□□□ 0.87
Rnf111Q99ML9 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Rnf111Q99ML9 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rnf111Q99ML9 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rnf111Q99ML9 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Rnf111Q99ML9 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rnf111Q99ML9 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rnf111Q99ML9 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC20.5■□□□□ 0.87
Rnf111Q99ML9 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rnf111Q99ML9 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rnf111Q99ML9 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rnf111Q99ML9 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC20.49■□□□□ 0.87
Rnf111Q99ML9 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rnf111Q99ML9 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rnf111Q99ML9 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms