Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trim47Q8C0E3 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC23.75■■□□□ 1.39
Trim47Q8C0E3 Gm9959-201ENSMUST00000068277 390 ntBASIC23.75■■□□□ 1.39
Trim47Q8C0E3 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trim47Q8C0E3 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Trim47Q8C0E3 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim47Q8C0E3 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Trim47Q8C0E3 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim47Q8C0E3 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim47Q8C0E3 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim47Q8C0E3 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trim47Q8C0E3 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trim47Q8C0E3 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
Trim47Q8C0E3 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
Trim47Q8C0E3 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trim47Q8C0E3 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Trim47Q8C0E3 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC23.72■■□□□ 1.39
Trim47Q8C0E3 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC23.72■■□□□ 1.39
Trim47Q8C0E3 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim47Q8C0E3 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim47Q8C0E3 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim47Q8C0E3 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim47Q8C0E3 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim47Q8C0E3 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim47Q8C0E3 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim47Q8C0E3 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC23.71■■□□□ 1.39
Trim47Q8C0E3 Gm45102-201ENSMUST00000207427 857 ntBASIC23.71■■□□□ 1.39
Trim47Q8C0E3 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim47Q8C0E3 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim47Q8C0E3 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Trim47Q8C0E3 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim47Q8C0E3 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim47Q8C0E3 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Trim47Q8C0E3 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC23.7■■□□□ 1.38
Trim47Q8C0E3 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC23.7■■□□□ 1.38
Trim47Q8C0E3 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim47Q8C0E3 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim47Q8C0E3 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Trim47Q8C0E3 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim47Q8C0E3 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim47Q8C0E3 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim47Q8C0E3 Gm14117-201ENSMUST00000122417 843 ntBASIC23.69■■□□□ 1.38
Trim47Q8C0E3 Rps24-207ENSMUST00000224568 714 ntBASIC23.69■■□□□ 1.38
Trim47Q8C0E3 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim47Q8C0E3 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim47Q8C0E3 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim47Q8C0E3 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
Trim47Q8C0E3 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim47Q8C0E3 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC23.68■■□□□ 1.38
Trim47Q8C0E3 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Trim47Q8C0E3 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC23.67■■□□□ 1.38
Trim47Q8C0E3 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC23.67■■□□□ 1.38
Trim47Q8C0E3 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC23.67■■□□□ 1.38
Trim47Q8C0E3 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Trim47Q8C0E3 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trim47Q8C0E3 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trim47Q8C0E3 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trim47Q8C0E3 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
Trim47Q8C0E3 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim47Q8C0E3 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim47Q8C0E3 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
Trim47Q8C0E3 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim47Q8C0E3 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trim47Q8C0E3 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trim47Q8C0E3 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trim47Q8C0E3 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trim47Q8C0E3 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC23.65■■□□□ 1.38
Trim47Q8C0E3 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC23.65■■□□□ 1.38
Trim47Q8C0E3 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC23.65■■□□□ 1.38
Trim47Q8C0E3 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trim47Q8C0E3 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Trim47Q8C0E3 AC158990.1-201ENSMUST00000221450 2016 ntBASIC23.64■■□□□ 1.38
Trim47Q8C0E3 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Trim47Q8C0E3 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
Trim47Q8C0E3 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Trim47Q8C0E3 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Trim47Q8C0E3 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim47Q8C0E3 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim47Q8C0E3 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim47Q8C0E3 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Trim47Q8C0E3 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim47Q8C0E3 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim47Q8C0E3 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trim47Q8C0E3 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC23.64■■□□□ 1.37
Trim47Q8C0E3 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Trim47Q8C0E3 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC23.63■■□□□ 1.37
Trim47Q8C0E3 Gm5131-201ENSMUST00000212776 1238 ntBASIC23.63■■□□□ 1.37
Trim47Q8C0E3 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Trim47Q8C0E3 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
Trim47Q8C0E3 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Trim47Q8C0E3 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC23.62■■□□□ 1.37
Trim47Q8C0E3 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
Trim47Q8C0E3 Etf1-202ENSMUST00000180351 108 ntBASIC23.62■■□□□ 1.37
Trim47Q8C0E3 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC23.62■■□□□ 1.37
Trim47Q8C0E3 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC23.62■■□□□ 1.37
Trim47Q8C0E3 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC23.62■■□□□ 1.37
Trim47Q8C0E3 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC23.61■■□□□ 1.37
Trim47Q8C0E3 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Trim47Q8C0E3 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Trim47Q8C0E3 AC153962.1-201ENSMUST00000218530 1948 ntBASIC23.61■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms